Factsheet for PGSC0003DMT400046255

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g068370.2.1	Tomato	nucleus	93.29	89.74
VIT_08s0056g01660.t01	Wine grape	nucleus	52.74	54.23
CDY50660	Canola	nucleus	50.61	49.4
CDY51752	Canola	nucleus	50.0	48.81
AT3G03750.2	Thale cress	nucleus	52.13	48.31
GSMUA_Achr8P20300_001	Banana	plasma membrane	47.26	47.99
Bra031976.1-P	Field mustard	nucleus	50.3	47.83
KRG91550	Soybean	nucleus	49.39	46.96
TraesCS3B01G342100.1	Wheat	nucleus	46.95	46.39
EES01534	Sorghum	nucleus	47.87	46.31
HORVU3Hr1G075380.1	Barley	nucleus	46.65	46.22
TraesCS3A01G295200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	46.65	46.08
TraesCS3D01G307900.1	Wheat	nucleus	46.34	45.78
Os01t0772150-00	Rice	nucleus	46.95	45.56
Zm00001d006369_P002	Maize	nucleus	46.65	45.13
PGSC0003DMT400054167	Potato	nucleus	24.09	16.39
PGSC0003DMT400051920	Potato	nucleus	24.7	15.91
PGSC0003DMT400080404	Potato	nucleus, plastid	25.3	13.58
PGSC0003DMT400077329	Potato	nucleus	24.7	12.07
PGSC0003DMT400018512	Potato	nucleus	24.09	11.0
PGSC0003DMT400044180	Potato	nucleus	25.3	10.77
PGSC0003DMT400075191	Potato	nucleus	21.65	10.76
PGSC0003DMT400003956	Potato	nucleus	22.56	10.63
PGSC0003DMT400054163	Potato	extracellular, nucleus	26.52	10.36
PGSC0003DMT400080391	Potato	nucleus	14.02	10.24
PGSC0003DMT400054154	Potato	nucleus	26.22	10.14
PGSC0003DMT400080398	Potato	nucleus	25.61	9.55
PGSC0003DMT400068351	Potato	nucleus	26.22	8.08
PGSC0003DMT400067504	Potato	nucleus	25.91	8.05
PGSC0003DMT400092528	Potato	cytosol	2.74	4.21
Os04t0692900-01	Rice	nucleus	3.66	2.72

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:102587141	MapMan:12.3.3.7	Gene3D:2.170.270.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987
GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0034968	InterPro:IPR001214
InterPro:IPR007728	UniProt:M1BIV4	PFAM:PF00856	PFAM:PF05033	EnsemblPlantsGene:PGSC0003DMG400017957	PGSC:PGSC0003DMG400017957
EnsemblPlants:PGSC0003DMT400046255	PFscan:PS50280	PANTHER:PTHR22884	PANTHER:PTHR22884:SF332	InterPro:Pre-SET_dom	InterPro:SET_dom
SMART:SM00317	SUPFAM:SSF82199	UniParc:UPI00029691FE	RefSeq:XP_006345362.1	RefSeq:XP_006345363.1	:

Description

Set domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017957]

Coordinates

chr1:+:64091469..64098100

Molecular Weight (calculated)

35594.3 Da

IEP (calculated)

6.716

GRAVY (calculated)

-0.139

Length

328 amino acids

Sequence
(BLAST)

001: MDKQQRTGES EKDDDGAGIL CRFAHLVFPY LEPAGLASVS ATCKVLHVVS KTITSSRISD ASRNLENYPI PFFNFVDSEL YANFIYSPVQ TLPTSPSIPW
101: GGGSGRVRSD PFIVRVEGAY GCDCESCDLD SGSNCACMDF SDLPTRECGP SCGCGLECGN RLTQKGISVK LKVVKDRRKG WSLCAAEFIP KGKFICEYTG
201: ELLTTEEARN RQRLYDKLSK SGHFSPALLV VKEHLPSGNA CMRINIDATR IGNIARFINH SCDGGNLSTL IVRSSGALLP RVCFLSSRVI LENEELAFSY
301: GDTTVNSTGS QCFCSSACCS GILPAEHT

Best Arabidopsis Sequence Match ( AT3G03750.2 )
(BLAST)

001: MQRLRESPPP KTRCLGEASD IIPAADRFLR CANLILPWLN PRELAVVAQT CKTLSLISKS LTIHRSLDAA RSLENISIPF HNSIDSQRYA YFIYTPFQIP
101: ASSPPPPRQW WGAAANECGS ESRPCFDSVS ESGRFGVSLV DESGCECERC EEGYCKCLAF AGMEEIANEC GSGCGCGSDC SNRVTQKGVS VSLKIVRDEK
201: KGWCLYADQL IKQGQFICEY AGELLTTDEA RRRQNIYDKL RSTQSFASAL LVVREHLPSG QACLRINIDA TRIGNVARFI NHSCDGGNLS TVLLRSSGAL
301: LPRLCFFAAK DIIAEEELSF SYGDVSVAGE NRDDKLNCSC GSSCCLGTLP CENT

Arabidopsis Description

SUVR3Histone-lysine N-methyltransferase SUVR3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRV2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.