Factsheet for PGSC0003DMT400049471

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 3
plasma membrane 1
extracellular 1
endoplasmic reticulum 1
golgi 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol, plastid
PProwler:	secretory
PTS1:	peroxisome
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88500	Soybean	cytosol	12.53	58.06
KRH25868	Soybean	cytosol, nucleus, plastid	35.5	55.04
KRH55647	Soybean	cytosol	55.22	51.29
KRH25865	Soybean	cytosol	17.4	51.02
GSMUA_Achr1P26200_001	Banana	extracellular	41.76	50.7
Solyc07g064110.2.1	Tomato	plastid	93.27	47.29
VIT_19s0014g05230.t01	Wine grape	cytosol	58.47	42.93
KRH22239	Soybean	cytosol	39.44	36.17
Os02t0132600-02	Rice	cytosol	43.16	34.44
AT4G04790.1	Thale cress	cytosol, mitochondrion	47.33	24.85
AT4G21880.1	Thale cress	cytosol	48.03	24.56
CDX94576	Canola	plastid	46.17	24.12
Bra029518.1-P	Field mustard	plastid	42.46	24.08
CDX79101	Canola	cytosol, mitochondrion	46.17	24.06
CDY16646	Canola	plastid	45.48	23.93
Bra013567.1-P	Field mustard	cytosol, mitochondrion	42.23	23.36
CDX82873	Canola	cytosol, mitochondrion	46.4	23.34
KRH27097	Soybean	cytosol, mitochondrion	40.37	23.05
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	43.16	21.58
TraesCS6D01G087600.1	Wheat	cytosol, plastid	42.92	21.46
TraesCS6B01G124900.1	Wheat	cytosol, plastid	42.92	21.24
HORVU6Hr1G017720.35	Barley	plastid	43.16	20.95
OQU84311	Sorghum	mitochondrion	43.16	19.0
Zm00001d015156_P001	Maize	plastid	42.0	18.89
GSMUA_Achr1P26220_001	Banana	plastid	2.09	2.11
KRH55650	Soybean	mitochondrion, plastid	0.93	1.03
KRG88502	Soybean	vacuole	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885
InterPro:IPR011990	UniProt:M1BNT4	PFAM:PF01535	PFAM:PF13041	EnsemblPlantsGene:PGSC0003DMG400019225	PGSC:PGSC0003DMG400019225
EnsemblPlants:PGSC0003DMT400049471	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002959EEF	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400019225]

Coordinates

chr7:-:54275339..54283650

Molecular Weight (calculated)

48926.6 Da

IEP (calculated)

7.610

GRAVY (calculated)

-0.174

Length

431 amino acids

Sequence
(BLAST)

001: MVDQMFEAGL TLSLETFNSI LEACDKSCEY NLVHRMYPMI LCHDIKPNSE TFRIMINMTV RIKDFEGAYG MLKDLEKFNM MPTTNMYNAI MGGYFREKDT
101: RAALGVLKRM EDANVKSDSQ TFSYLISNCT TEDNISKFLD EMKDSGVQLT KHVYMALING YAASGQFEKA KQVICDRGVP AKGFNEIRSV LVSALASHGQ
201: ISDALDIYKE MEEAQCKLEP KAVICLIENL QTEGDLHRLL HLLEQLNGLD QWVDASYRVI TYCIRKNHFR SIVNLLKRLV DAYKSDEVAK EVLFDEVFCQ
301: IAEQDPINLQ LGLDLLQAIK KEIGLLPSRQ SLDFLLSACV NAKDLQACYL IWKEYKIAGL PYNILSYVRM YRALLALGDY KSAENILKNI PRDDIHVCSV
401: VKACQTAHGM SAPAKGKKKK RKTGKNVSYK M

Best Arabidopsis Sequence Match ( AT4G21880.1 )
(BLAST)

001: MALKAKKSLS AIFRFAMRNA AKTAEVEAKA VAGDSLISDT GPVSMSLIPD FLSSLKSPED SSNIGQDFGE PALAGQVSSA LDVKSIGYNL LRERNGEKVF
101: PKNVLETLDL LSRKGCSSQK PKQASRGRML TENYQNKQSE IMEKLAKGCV RKLGTETMFE VLTKMGKEAG EKEYNAMTKL CIQRARRSND AEYALDQIGK
201: AIEHLKEMRQ LGFSIGEGAY GPFFKYLVDM EMVAEFQILK DFIKEACPES CGRLVYYEML LWIQVNDEEK IHKLCNKVDD SGLSLSILQE YYLVALCEKD
301: SKENFQKLLE IVDITTVSSP DALKSIFGYL GKSLLESVAM KLLWELRDCR KDGVETVSNL IFSYATCIPN STVEDAIFKF NKLHEELDIV PSSTSYENLV
401: SYLCGSNEVV TALDIVENMC EAGLVISANI LHSLLQAIEQ ILEFNLVQRI YSIMSNKSVK PNSETFRKSI NLCIRIKDFE GAYNMLGNLK NFNLAPNSSM
501: YNSIMAGYFR EKKVNSALKV LKEMKEADVK PDSVTFSYLI NYCGEEATIA KYYKEMKQAG VEVNKHVYMS LVKAYASCGQ FEKAKQVLMD LEVPAKDHNE
601: LKSVLISALA SNGNITEALS IYEEMKKLRC PVEPKAILSL IENSDSNAEL GTLVELTHEL RDSKFWIDGF FKIIVFAVRN NRSSSILDLL EQTKNHLSKD
701: DVGVEYWFEE VFKSIAETES SDVKVGLDLV SFMKEELELC PSRKCLDFLL HACVNAKDKQ SALLVWEEYQ CAELPYNVIN YLRMYQVLVA AGDSKSAEAI
801: VSKIPNDDKD VKCIIKESRI VFTPKLKKKK KKSKQKGLSL QAK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21880, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O49711]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.