Factsheet for PGSC0003DMT400054163

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, extracellular

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 25270759

msms PMID: 25270759 doi

DD Burra, O Berkowitz, PE Hedley, J Morris, S Resjö, F Levander, E Liljeroth, E Andreasson, E Alexandersson

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g093710.1.1	Tomato	nucleus	87.74	87.95
PGSC0003DMT400054154	Potato	nucleus	84.76	83.96
PGSC0003DMT400054167	Potato	nucleus	47.74	83.19
PGSC0003DMT400080398	Potato	nucleus	76.07	72.61
PGSC0003DMT400092528	Potato	cytosol	18.21	71.5
PGSC0003DMT400080404	Potato	nucleus, plastid	47.02	64.65
PGSC0003DMT400080391	Potato	nucleus	32.5	60.8
Bra005362.1-P	Field mustard	nucleus	25.12	51.59
VIT_16s0013g00310.t01	Wine grape	nucleus	28.1	51.08
TraesCS3A01G520700.1	Wheat	nucleus	16.19	47.22
VIT_16s0013g00650.t01	Wine grape	nucleus	31.07	44.85
CDY31670	Canola	nucleus	31.07	36.4
CDX84255	Canola	nucleus	30.95	36.06
CDY25627	Canola	nucleus	31.79	35.79
KRG90121	Soybean	nucleus	23.33	35.51
CDX89510	Canola	nucleus	31.43	34.83
AT2G22740.1	Thale cress	nucleus	32.02	34.05
TraesCS3B01G590300.1	Wheat	nucleus	24.4	32.64
Bra030212.1-P	Field mustard	nucleus	30.71	32.58
AT2G35160.3	Thale cress	nucleus	30.48	32.24
EES05802	Sorghum	nucleus	26.07	27.83
Os04t0544100-01	Rice	nucleus	27.5	27.47
PGSC0003DMT400068351	Potato	nucleus	34.76	27.44
PGSC0003DMT400077329	Potato	nucleus	21.31	26.68
PGSC0003DMT400067504	Potato	nucleus	33.45	26.61
PGSC0003DMT400046255	Potato	cytosol	10.36	26.52
PGSC0003DMT400018512	Potato	nucleus	21.79	25.49
EES12588	Sorghum	nucleus	26.55	25.03
PGSC0003DMT400075191	Potato	nucleus	19.29	24.55
PGSC0003DMT400003956	Potato	nucleus	19.64	23.71
TraesCS2B01G409600.1	Wheat	nucleus	26.55	23.18
TraesCS2D01G389100.1	Wheat	nucleus	26.31	23.02
TraesCS2A01G389600.1	Wheat	mitochondrion, nucleus	26.31	21.92
PGSC0003DMT400051920	Potato	nucleus	10.83	17.88
PGSC0003DMT400044180	Potato	nucleus	12.38	13.49

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	Gene3D:2.170.270.10	Gene3D:2.30.280.10	ncoils:Coil	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538
GO:GO:0032259	GO:GO:0034968	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728
InterPro:IPR036987	UniProt:M1BVX3	PFAM:PF00856	PFAM:PF02182	PFAM:PF05033	EnsemblPlantsGene:PGSC0003DMG400021005
PGSC:PGSC0003DMG400021005	EnsemblPlants:PGSC0003DMT400054163	PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015
PANTHER:PTHR22884	PANTHER:PTHR22884:SF458	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199
SUPFAM:SSF88697	UniParc:UPI0002952742	SEG:seg	:	:	:

Description

Histone-lysine n-methyltransferase, suvh [Source:PGSC_GENE;Acc:PGSC0003DMG400021005]

Coordinates

chr3:+:37469843..37472440

Molecular Weight (calculated)

94929.7 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.741

Length

840 amino acids

Sequence
(BLAST)

001: MSVLAETSPS EMLGKKKLHQ MVDTKSPSTF KRLKVDATRN FPENCGPFVH ENYGTREIYP EFPSATKLVK VNATRNFPEN CGPCVLQKKN ERDTQCSANA
101: EIESCSEVEM NVVELGDPLS VFVPKDMQFD LAAAGACEKE GGDSSHLNTS CQPTTNGNHV LKTKEENLMY DDSTQLNEVL VNQVLQKPST DTGNTCDWFI
201: KGYPIENGPE LPAIVSQENL IDGRNDEPRK ETNKRVQYKE VADDESRSQV DSSSCSESNS QKSGDKTPSA GKKGGKGEIV QEEAVKCPEP LHTCKVIFED
301: ESAVMKKQIN LGVSQEDLRN SDVLCGASGH GLLTEYEHIQ KVKEVKETLK LFDDEYTKLL QEDKAEKHEG RSKRRIHIEA AMNLKKQKKW VNCEWTFGHV
401: PGVQIGDQFR KDVASSIVDS GRYDNEAISS ETFIYVGQGG NPKVSLNGRV EGQKLEGGNL ALKNSMDLGY PVRVICSRQR LNSEKSDLRY IYDGLYTVTK
501: CWEERAPTEK YIFKFELKRN LGQPKLTREL VSRPAKLVKV NHSCVNKATK SIMQSEFVVD YDVSQGKEKI PIHVVNAIDD EKLPPFTYIT NMQYPDWYYI
601: SRPQGCNCTS GCLDSEQCSC ASRNGGEIPF NTRGSIVRAQ PLVYECGPSC KCPPSCKNRV SQHGPRYHLE VFKTESRGWG LRSRDHVSSG SFICEYVGEL
701: LDEKEAENRI DHDEYLFDIG NYDEEIPKRN VARSNNLKVE SNSLMRKDED GFTLDALRYG NVGRFINHSC SPNLYAQNVM YYHGDKRVPH IMFFASESIA
801: PLEELTYHYN YHIDHVYDKN GDVKRKNCRC GSRKCEGRMY

Best Arabidopsis Sequence Match ( AT2G22740.1 )
(BLAST)

001: MEMGVMENLM VHTEISKVKS QSNGEVEKRG VSVLENGGVC KLDRMSGLKF KRRKVFAVRD FPPGCGSRAM EVKIACENGN VVEDVKVVES LVKEEESLGQ
101: RDASENVSDI RMAEPVEVQP LRICLPGGDV VRDLSVTAGD ECSNSEQIVA GSGVSSSSGT ENIVRDIVVY ADESSLGMDN LDQTQPLEIE MSDVAVAKPR
201: LVAGRKKAKK GIACHSSLKV VSREFGEGSR KKKSKKNLYW RDRESLDSPE QLRILGVGTS SGSSSGDSSR NKVKETLRLF HGVCRKILQE DEAKPEDQRR
301: KGKGLRIDFE ASTILKRNGK FLNSGVHILG EVPGVEVGDE FQYRMELNIL GIHKPSQAGI DYMKYGKAKV ATSIVASGGY DDHLDNSDVL TYTGQGGNVM
401: QVKKKGEELK EPEDQKLITG NLALATSIEK QTPVRVIRGK HKSTHDKSKG GNYVYDGLYL VEKYWQQVGS HGMNVFKFQL RRIPGQPELS WVEVKKSKSK
501: YREGLCKLDI SEGKEQSPIS AVNEIDDEKP PLFTYTVKLI YPDWCRPVPP KSCCCTTRCT EAEARVCACV EKNGGEIPYN FDGAIVGAKP TIYECGPLCK
601: CPSSCYLRVT QHGIKLPLEI FKTKSRGWGV RCLKSIPIGS FICEYVGELL EDSEAERRIG NDEYLFDIGN RYDNSLAQGM SELMLGTQAG RSMAEGDESS
701: GFTIDAASKG NVGRFINHSC SPNLYAQNVL YDHEDSRIPH VMFFAQDNIP PLQELCYDYN YALDQVRDSK GNIKQKPCFC GAAVCRRRLY

Arabidopsis Description

SUVH6Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.