Factsheet for PGSC0003DMT400054167

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g093720.1.1	Tomato	nucleus	54.36	87.33
PGSC0003DMT400092528	Potato	cytosol	37.76	85.05
PGSC0003DMT400080404	Potato	nucleus, plastid	67.84	53.52
PGSC0003DMT400080398	Potato	nucleus	94.4	51.7
VIT_16s0013g00310.t01	Wine grape	nucleus	49.17	51.3
PGSC0003DMT400080391	Potato	nucleus	47.1	50.56
PGSC0003DMT400054154	Potato	nucleus	86.51	49.17
Bra005362.1-P	Field mustard	nucleus	41.7	49.14
PGSC0003DMT400054163	Potato	extracellular, nucleus	83.19	47.74
TraesCS3A01G520700.1	Wheat	nucleus	26.76	44.79
VIT_16s0013g00650.t01	Wine grape	nucleus	51.66	42.78
KRG90121	Soybean	nucleus	40.04	34.96
CDY31670	Canola	nucleus	45.85	30.82
CDX84255	Canola	nucleus	45.44	30.37
CDY25627	Canola	nucleus	45.44	29.36
TraesCS3B01G590300.1	Wheat	nucleus	37.97	29.14
CDX89510	Canola	nucleus	45.64	29.02
AT2G22740.1	Thale cress	nucleus	46.47	28.35
AT2G35160.3	Thale cress	nucleus	45.64	27.71
Bra030212.1-P	Field mustard	nucleus	44.4	27.02
PGSC0003DMT400077329	Potato	nucleus	35.27	25.34
PGSC0003DMT400018512	Potato	nucleus	36.1	24.23
PGSC0003DMT400046255	Potato	cytosol	16.39	24.09
Os04t0544100-01	Rice	nucleus	41.29	23.66
EES05802	Sorghum	nucleus	38.38	23.51
PGSC0003DMT400075191	Potato	nucleus	31.74	23.18
EES12588	Sorghum	nucleus	41.49	22.45
PGSC0003DMT400003956	Potato	nucleus	32.37	22.41
PGSC0003DMT400067504	Potato	nucleus	47.93	21.88
PGSC0003DMT400068351	Potato	nucleus	47.72	21.62
TraesCS2B01G409600.1	Wheat	nucleus	40.66	20.37
TraesCS2D01G389100.1	Wheat	nucleus	40.46	20.31
TraesCS2A01G389600.1	Wheat	mitochondrion, nucleus	40.46	19.35
PGSC0003DMT400051920	Potato	nucleus	18.05	17.09
PGSC0003DMT400044180	Potato	nucleus	19.29	12.06

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:102592451	MapMan:12.3.3.7	Gene3D:2.170.270.10	Gene3D:2.30.280.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538
GO:GO:0032259	GO:GO:0034968	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR003616	InterPro:IPR007728
InterPro:IPR036987	UniProt:M1BVX4	PFAM:PF00856	PFAM:PF02182	PFAM:PF05033	EnsemblPlantsGene:PGSC0003DMG400021006
PGSC:PGSC0003DMG400021006	EnsemblPlants:PGSC0003DMT400054167	PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015
PANTHER:PTHR22884	PANTHER:PTHR22884:SF458	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199
SUPFAM:SSF88697	UniParc:UPI000295B393	RefSeq:XP_015160527.1	:	:	:

Description

Histone-lysine n-methyltransferase, suvh [Source:PGSC_GENE;Acc:PGSC0003DMG400021006]

Coordinates

chr3:+:37461999..37463447

Molecular Weight (calculated)

55406.7 Da

IEP (calculated)

8.105

GRAVY (calculated)

-0.637

Length

482 amino acids

Sequence
(BLAST)

001: MTMKNQKKWV NCEWTFGHVP GVEIGDQFRF RAELVTIGLH HQVMNGINYV NIGRKYVATS IVDSGRCDNE AISSETFIYV GQGGNPKVSV NARVEDQKLK
101: GGNLALKNSM DMGCPVRVIC GRQRVNGEKS DMRYIYDGLY TVTKCWEEIA PTGKYVFKFE LKRNLGQPKL NREIVSRPTS LVKVDHFHVN KETKSIMQSE
201: FVVDYDVLQG KEKIPIRVVN AIDDERLPSF TYITNIQYPD WYYISRPQGC NCTSGCLDSE QCSCTSRNGG EIPFNTRGSI VRAQPLVYEC GPSCKCPPTC
301: KNRISQHGPR DHLEVFKTES RGWGLRSRDH VSSGSFICEY VGELLDEMEA ESRIDNDEYL FDVGNYDEEI PKRNPMRNNN LKVESDSLRR KDEDGFTLDA
401: VRYGNVGRFI NYSCSPNLYA QNVMYYHGDR RVPHIMFFAS KSIAPLEEFT YHYNYDHVCD KNRNLKRKNC RCGSRKCEAR MY

Best Arabidopsis Sequence Match ( AT2G22740.1 )
(BLAST)

001: MEMGVMENLM VHTEISKVKS QSNGEVEKRG VSVLENGGVC KLDRMSGLKF KRRKVFAVRD FPPGCGSRAM EVKIACENGN VVEDVKVVES LVKEEESLGQ
101: RDASENVSDI RMAEPVEVQP LRICLPGGDV VRDLSVTAGD ECSNSEQIVA GSGVSSSSGT ENIVRDIVVY ADESSLGMDN LDQTQPLEIE MSDVAVAKPR
201: LVAGRKKAKK GIACHSSLKV VSREFGEGSR KKKSKKNLYW RDRESLDSPE QLRILGVGTS SGSSSGDSSR NKVKETLRLF HGVCRKILQE DEAKPEDQRR
301: KGKGLRIDFE ASTILKRNGK FLNSGVHILG EVPGVEVGDE FQYRMELNIL GIHKPSQAGI DYMKYGKAKV ATSIVASGGY DDHLDNSDVL TYTGQGGNVM
401: QVKKKGEELK EPEDQKLITG NLALATSIEK QTPVRVIRGK HKSTHDKSKG GNYVYDGLYL VEKYWQQVGS HGMNVFKFQL RRIPGQPELS WVEVKKSKSK
501: YREGLCKLDI SEGKEQSPIS AVNEIDDEKP PLFTYTVKLI YPDWCRPVPP KSCCCTTRCT EAEARVCACV EKNGGEIPYN FDGAIVGAKP TIYECGPLCK
601: CPSSCYLRVT QHGIKLPLEI FKTKSRGWGV RCLKSIPIGS FICEYVGELL EDSEAERRIG NDEYLFDIGN RYDNSLAQGM SELMLGTQAG RSMAEGDESS
701: GFTIDAASKG NVGRFINHSC SPNLYAQNVL YDHEDSRIPH VMFFAQDNIP PLQELCYDYN YALDQVRDSK GNIKQKPCFC GAAVCRRRLY

Arabidopsis Description

SUVH6Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.