Factsheet for PGSC0003DMT400067504

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g077940.1.1	Tomato	nucleus	93.18	94.89
PGSC0003DMT400068351	Potato	nucleus	60.32	59.87
TraesCS3A01G520700.1	Wheat	nucleus	13.26	48.61
PGSC0003DMT400054167	Potato	nucleus	21.88	47.93
PGSC0003DMT400080404	Potato	nucleus, plastid	23.96	41.41
PGSC0003DMT400092528	Potato	cytosol	8.14	40.19
PGSC0003DMT400080391	Potato	nucleus	16.48	38.75
TraesCS3B01G590300.1	Wheat	nucleus	21.12	35.51
PGSC0003DMT400054154	Potato	nucleus	27.37	34.08
PGSC0003DMT400054163	Potato	extracellular, nucleus	26.61	33.45
PGSC0003DMT400080398	Potato	nucleus	26.89	32.27
PGSC0003DMT400077329	Potato	nucleus	19.6	30.85
Os04t0544100-01	Rice	nucleus	24.34	30.56
EES05802	Sorghum	nucleus	22.44	30.11
EES12588	Sorghum	nucleus	24.43	28.96
PGSC0003DMT400018512	Potato	nucleus	19.6	28.83
PGSC0003DMT400075191	Potato	nucleus	17.71	28.33
PGSC0003DMT400003956	Potato	nucleus	18.56	28.16
TraesCS2B01G409600.1	Wheat	nucleus	24.43	26.82
TraesCS2D01G389100.1	Wheat	nucleus	23.96	26.35
PGSC0003DMT400046255	Potato	cytosol	8.05	25.91
TraesCS2A01G389600.1	Wheat	mitochondrion, nucleus	24.05	25.2
PGSC0003DMT400051920	Potato	nucleus	8.52	17.68
PGSC0003DMT400044180	Potato	nucleus	10.23	14.01

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:102593293	MapMan:12.3.3.7	Gene3D:2.170.270.10	Gene3D:2.30.280.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024
GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105
InterPro:IPR003616	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987	UniProt:M1CHE4	PFAM:PF00856
PFAM:PF02182	PFAM:PF05033	EnsemblPlantsGene:PGSC0003DMG400026247	PGSC:PGSC0003DMG400026247	EnsemblPlants:PGSC0003DMT400067504	PFscan:PS50280
PFscan:PS50867	PFscan:PS50868	PFscan:PS51015	PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF458
InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00466
SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199	SUPFAM:SSF88697	UniParc:UPI000294A949
RefSeq:XP_006359220.2	:	:	:	:	:

Description

SET domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026247]

Coordinates

chr8:-:51079933..51085107

Molecular Weight (calculated)

117453.0 Da

IEP (calculated)

8.429

GRAVY (calculated)

-0.598

Length

1056 amino acids

Sequence
(BLAST)

0001: MVSFSNDGLS DQCVKKRSSV NGYHLLDSGT MPKHKVRIVC GERDLPPGCG RNTPKVDLNH KENDVVSISE NMADTLVAHG DHGPNTGVEF CSVEVADCLF
0101: DMEENEKLDK LVGNASARTT NVIENGLEEP TSHDKSLRFE LSKDHKNSEM SLLKKAKVIG YDELGTEVDV ERCSFLVENV VGVYKDHVLH PGSVTDRAIP
0201: VCDSKTLSLP QCQIKNGSVE DNISPLPKKK YCRRGVFAVR DFPPFCGRNA PKPTKLDRLG GSEASKRAIL LDKGVTENEV TETSKNVMDT GTLPLGLTAS
0301: READSWSKTE VTGSKCSLIE RATVHVDDPE GVQDNYVRRS QLERTVMLPE TMTKKENDDT GKFLRKESIV YSRNEHEKAT TARHGFGSGD KITKPVVHRL
0401: MDERCSPWRQ KKQTPRQIVQ GLMAETNKDW RQKEQTRLDC LMSRNQVQKP SMYRQRMSVV VARKSIPKPK FPERLFGRSR SGFVGEAVPE YPSAPVSRND
0501: GIRNLNCEAQ PEDSPIGQKK CEFDETRPPF GPKSSSRSDA RSKVLETLRL FQSHFRKILQ GEESMSRPAE VKAKQKDKLR RIDLQAAKLV KAKGKEVNTG
0601: TQILGEVPGV EVGDAFQYRV ELALVGVHRL YQAGIDSMYI KGELLVATSI VASGAYDDDL GDADELIYSG QGGNVVGKVK IPEDQKLVKG NLALKNSIRT
0701: RNPVRVIRGS KEIRTPESGG RPNVVTTYVY DGLYTVENYW TEKGPHGKMV FMFKLVRIPG QPELTWKEVQ SSKNSKARHG VCVPDITEGK ESLPIAAVNT
0801: VDGEKPPPFK YIKNMMYPVG FHPAPPKGCD CIGRCSDAKR CSCAVKNGGE IPYNRNGAIV EVKPLVYECG PHCKCPPSCY NRVSQHGIKI PLEIFKTDTR
0901: GWGVRALTSI SSGTFICEYT GQLLEDTEAE RRIGMDEYLF DIGQNYGGYT ANSSGQANQN ELVEEGGYTI DAARYGNVGR FINHSCSPNL YAQNVVYDHK
1001: DKRVPHIMLF AADNIPPLKE LSYHYNYVVD QVYDSGGKIK VKRCFCGSSD CSGRMY

Best Arabidopsis Sequence Match ( AT2G35160.4 )
(BLAST)

001: MVHSESSILS SLRGGDGGGI PCSKDELAIN GSYTDPMGRR KSKRFKVAAE SEFSPDFGSI TRQLRSRRMQ KEFTVETYET RNVSDVCVLS SQADVELIPG
101: EIVAERDSFK SVDCNDMSVG LTEGAESLGV NMQEPMKDRN MPENTSEQNM VEVHPPSISL PEEDMMGSVC RKSITGTKEL HGRTISVGRD LSPNMGSKFS
201: KNGKTAKRSI SVEEENLVLE KSDSGDHLGP SPEVLELEKS EVWIITDKGV VMPSPVKPSE KRNGDYGEGS MRKNSERVAL DKKRLASKFR LSNGGLPSCS
301: SSGDSARYKV KETMRLFHET CKKIMQEEEA RPRKRDGGNF KVVCEASKIL KSKGKNLYSG TQIIGTVPGV EVGDEFQYRM ELNLLGIHRP SQSGIDYMKD
401: DGGELVATSI VSSGGYNDVL DNSDVLIYTG QGGNVGKKKN NEPPKDQQLV TGNLALKNSI NKKNPVRVIR GIKNTTLQSS VVAKNYVYDG LYLVEEYWEE
501: TGSHGKLVFK FKLRRIPGQP ELPWKEVAKS KKSEFRDGLC NVDITEGKET LPICAVNNLD DEKPPPFIYT AKMIYPDWCR PIPPKSCGCT NGCSKSKNCA
601: CIVKNGGKIP YYDGAIVEIK PLVYECGPHC KCPPSCNMRV SQHGIKIKLE IFKTESRGWG VRSLESIPIG SFICEYAGEL LEDKQAESLT GKDEYLFDLG
701: DEDDPFTINA AQKGNIGRFI NHSCSPNLYA QDVLYDHEEI RIPHIMFFAL DNIPPLQELS YDYNYKIDQV YDSNGNIKKK FCYCGSAECS GRLY

Arabidopsis Description

SUVH5Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 [Source:UniProtKB/Swiss-Prot;Acc:O82175]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.