Factsheet for PGSC0003DMT400068351

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g060960.1.1	Tomato	nucleus	92.95	93.74
PGSC0003DMT400067504	Potato	nucleus	59.87	60.32
TraesCS3A01G520700.1	Wheat	nucleus	14.38	53.12
PGSC0003DMT400054167	Potato	nucleus	21.62	47.72
PGSC0003DMT400080404	Potato	nucleus, plastid	24.15	42.06
PGSC0003DMT400092528	Potato	cytosol	8.18	40.65
TraesCS3B01G590300.1	Wheat	nucleus	23.31	39.49
PGSC0003DMT400080391	Potato	nucleus	16.64	39.42
PGSC0003DMT400054154	Potato	nucleus	28.29	35.5
PGSC0003DMT400054163	Potato	extracellular, nucleus	27.44	34.76
Os04t0544100-01	Rice	nucleus	26.32	33.29
PGSC0003DMT400080398	Potato	nucleus	27.26	32.95
EES05802	Sorghum	nucleus	24.15	32.66
EES12588	Sorghum	nucleus	26.41	31.54
PGSC0003DMT400077329	Potato	nucleus	19.83	31.45
PGSC0003DMT400018512	Potato	nucleus	19.64	29.11
PGSC0003DMT400075191	Potato	nucleus	18.05	29.09
TraesCS2B01G409600.1	Wheat	nucleus	26.03	28.79
PGSC0003DMT400003956	Potato	nucleus	18.7	28.59
TraesCS2D01G389100.1	Wheat	nucleus	25.28	28.02
TraesCS2A01G389600.1	Wheat	mitochondrion, nucleus	25.66	27.08
PGSC0003DMT400046255	Potato	cytosol	8.08	26.22
PGSC0003DMT400051920	Potato	nucleus	8.74	18.27
PGSC0003DMT400044180	Potato	nucleus	10.81	14.92

Protein Annotations

KEGG:00310+2.1.1.43	EntrezGene:102599225	MapMan:12.3.3.7	Gene3D:2.170.270.10	Gene3D:2.30.280.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024
GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105
InterPro:IPR003616	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987	UniProt:M1CIX4	PFAM:PF00856
PFAM:PF02182	PFAM:PF05033	EnsemblPlantsGene:PGSC0003DMG400026579	PGSC:PGSC0003DMG400026579	EnsemblPlants:PGSC0003DMT400068351	PFscan:PS50280
PFscan:PS50867	PFscan:PS50868	PFscan:PS51015	PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF458
InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00466
SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199	SUPFAM:SSF88697	UniParc:UPI000294E8DD
RefSeq:XP_006361159.1	SEG:seg	:	:	:	:

Description

SET domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026579]

Coordinates

chr6:+:44262032..44271992

Molecular Weight (calculated)

116611.0 Da

IEP (calculated)

7.095

GRAVY (calculated)

-0.549

Length

1064 amino acids

Sequence
(BLAST)

0001: MASVSNDGLS NKSVKKRQLE NGCHSSYLGI MPKYKTRKVS AVRDFPPGCG RTSPKVDLNH EQNAVVSTKI EDMANVILVD GVKETNIEIK SQSVEGVNCL
0101: INLKDQEKVD RLAGEVVATN MSAIANGVGE KISDEKSIGV ELPKDLKTSE MELSKGTEDI QYDTSVKEVD EQGVPLVENV GGGHKTPVGE VKMFSPPQLI
0201: SVMEHTSSPK NKYRKRRVSA VRDFPPFCGT NAPKPTVQKC FGVTEESKDV AGFGKAATNN EVIETLRDVT DTGALPEKLI GSEDADSLKE RDVSSPKDRQ
0301: LEQITMVRTE EQEGVQCDYD GRSRVERTVV MPEIMMKKEG DAGVVGKETL VYSENEREKL TTASSALGSG NEKPITKGAK PYCARKQGKQ KSLDDPVSGN
0401: EIVVSQVESH LTKTAVNALG SGHEIVKPIV QGLMAKPYCP WMQGERTSLD CGNQVEKDDL SGRKKAKAVT RKNNPRGKKK LATVGEATDG LSSALVVFND
0501: EGSGLWATSN DGACSLNREA VHEDSPVRRG QCDFDVTLPP FGPNSSSHGD SRTKVRETLR LFQGICRKLL QGEESKSKPE EAKSKQGPNR IDLHAAKIIK
0601: EKGKEVNTGQ HILGEVPGVE VGDEFQYRVE LAIVGVHRLY QAGIDYMKQG GMLIAISIVS SGVYDDGLED ADVLIYSGQG GNVVGKSKTP EDQKLERGNL
0701: ALKNSISVKN PVRVIRGSKE TKTSDSVDGK GKLVTTYVYD GLYTVENYWT EQGTKGKMVF MFKLVRVPGQ PELAWKEVKS SKKSKVRHGV CVHDITDGKE
0801: TFAISAVNTI DGEKPPPFNY IKKIIYPDWF QPCPFKGCDC VGRCSDSKKC SCAVKNGGEI PYNRNGAIVE VKPLVYECGP HCKCPPSCYN RVSQHGIKVP
0901: LEIFKTNSRG WGVRALTSIP SGTFICEYVG ELLEDKEAEQ RIGSDEYLFD IGQNYSDCSV NSSRQAELSE VVEEGYTIDA AQYGNIGRFI NHSCSPNLYA
1001: QSVLYDHEDK KMPHIMLFAA DNIPPLAELS YHYNYSVDQV HDSKGNIKVK KCFCGSSECS GRMY

Best Arabidopsis Sequence Match ( AT2G35160.5 )
(BLAST)

001: MGRRKSKRFK VAAESEFSPD FGSITRQLRS RRMQKEFTVE TYETRNVSDV CVLSSQADVE LIPGEIVAER DSFKSVDCND MSVGLTEGAE SLGVNMQEPM
101: KDRNMPENTS EQNMVEVHPP SISLPEEDMM GSVCRKSITG TKELHGRTIS VGRDLSPNMG SKFSKNGKTA KRSISVEEEN LVLEKSDSGD HLGPSPEVLE
201: LEKSEVWIIT DKGVVMPSPV KPSEKRNGDY GEGSMRKNSE RVALDKKRLA SKFRLSNGGL PSCSSSGDSA RYKVKETMRL FHETCKKIMQ EEEARPRKRD
301: GGNFKVVCEA SKILKSKGKN LYSGTQIIGT VPGVEVGDEF QYRMELNLLG IHRPSQSGID YMKDDGGELV ATSIVSSGGY NDVLDNSDVL IYTGQGGNVG
401: KKKNNEPPKD QQLVTGNLAL KNSINKKNPV RVIRGIKNTT LQSSVVAKNY VYDGLYLVEE YWEETGSHGK LVFKFKLRRI PGQPELPWKE VAKSKKSEFR
501: DGLCNVDITE GKETLPICAV NNLDDEKPPP FIYTAKMIYP DWCRPIPPKS CGCTNGCSKS KNCACIVKNG GKIPYYDGAI VEIKPLVYEC GPHCKCPPSC
601: NMRVSQHGIK IKLEIFKTES RGWGVRSLES IPIGSFICEY AGELLEDKQA ESLTGKDEYL FDLGDEDDPF TINAAQKGNI GRFINHSCSP NLYAQDVLYD
701: HEEIRIPHIM FFALDNIPPL QELSYDYNYK IDQVYDSNGN IKKKFCYCGS AECSGRLY

Arabidopsis Description

SUVH5Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 [Source:UniProtKB/Swiss-Prot;Acc:O82175]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.