Factsheet for PGSC0003DMT400071438

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013560.1.1	Tomato	nucleus	56.48	59.22
PGSC0003DMT400084945	Potato	nucleus	55.56	57.97
Solyc11g013620.1.1	Tomato	plasma membrane	51.85	44.27
PGSC0003DMT400086641	Potato	nucleus	29.63	32.16
PGSC0003DMT400047912	Potato	nucleus	29.17	31.66
PGSC0003DMT400092914	Potato	nucleus	13.89	26.55
PGSC0003DMT400086891	Potato	nucleus	18.98	18.98
PGSC0003DMT400091420	Potato	nucleus	18.52	17.32
PGSC0003DMT400085069	Potato	nucleus	6.48	12.61
PGSC0003DMT400091980	Potato	nucleus	20.37	10.92

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M1CNS8	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400027794
PGSC:PGSC0003DMG400027794	EnsemblPlants:PGSC0003DMT400071438	PFscan:PS51294	PANTHER:PTHR12374	PANTHER:PTHR12374:SF26	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000295C766	SEG:seg	:

Description

Myb family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400027794]

Coordinates

chr11:-:9562949..9563599

Molecular Weight (calculated)

24476.9 Da

IEP (calculated)

9.901

GRAVY (calculated)

-0.693

Length

216 amino acids

Sequence
(BLAST)

001: MDRNCSENGK SIKLFGFEIT TSTTTTTSSA AAIISEKYFM GRKIKKGNRW TEDEQKAFLK GLDFHGKGSW TNIAKDFVPT RTSTQVASHA QKYFVRLLDA
101: NSNERKKRKK SSVFDLRIEK TEHLEIKTED THQAIVPLGN NQESVQETHN VPSFVPNYMM KRVPTVMPPL TWVYMYPYND HYASTSISTT TFDKPLSGIS
201: SSSSSSSEDN NLKLKL

Best Arabidopsis Sequence Match ( AT5G61620.1 )
(BLAST)

001: MVKETVTVAK TCSHCGHNGH NARTCLNGVN KASVKLFGVN ISSDPIRPPE VTALRKSLSL GNLDALLAND ESNGSGDPIA AVDDTGYHSD GQIHSKKGKT
101: AHEKKKGKPW TEEEHRNFLI GLNKLGKGDW RGIAKSFVST RTPTQVASHA QKYFIRLNVN DKRKRRASLF DISLEDQKEK ERNSQDASTK TPPKQPITGI
201: QQPVVQGHTQ TEISNRFQNL SMEYMPIYQP IPPYYNFPPI MYHPNYPMYY ANPQVPVRFV HPSGIPVPRH IPIGLPLSQP SEASNMTNKD GLDLHIGLPP
301: QATGASDLTG HGVIHVK

Arabidopsis Description

Probable transcription factor At5g61620 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.