Factsheet for PGSC0003DMT400075191

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g096990.1.1	Tomato	nucleus	97.27	96.54
PGSC0003DMT400003956	Potato	nucleus	73.79	69.97
VIT_05s0049g02220.t01	Wine grape	nucleus	66.21	65.03
CDX73506	Canola	nucleus	56.06	58.45
CDX78210	Canola	nucleus	55.61	58.16
Bra007048.1-P	Field mustard	nucleus	55.45	58.0
AT4G13460.2	Thale cress	nucleus	57.12	58.0
KRH49479	Soybean	nucleus	60.45	56.28
KRG89164	Soybean	nucleus	60.76	56.01
AT2G33290.2	Thale cress	nucleus	53.48	54.22
CDY23755	Canola	nucleus	51.36	53.22
CDY37735	Canola	nucleus, plastid	50.3	52.12
Bra021840.1-P	Field mustard	nucleus, plastid	50.3	52.12
GSMUA_Achr5P13120_001	Banana	nucleus	47.42	51.57
GSMUA_Achr4P29270_001	Banana	nucleus	41.52	50.93
KRH07636	Soybean	nucleus	44.09	50.61
CDY19475	Canola	nucleus	41.52	49.64
CDY17156	Canola	nucleus	42.12	49.12
TraesCS2A01G235400.1	Wheat	nucleus	49.7	48.96
Os07t0435900-01	Rice	nucleus	50.45	48.68
HORVU2Hr1G053260.1	Barley	nucleus	49.7	48.66
TraesCS2D01G240000.1	Wheat	nucleus	49.7	48.59
GSMUA_Achr1P01130_001	Banana	nucleus	40.45	48.55
TraesCS2B01G254700.1	Wheat	nucleus	48.94	47.99
EER96294	Sorghum	nucleus	49.39	45.92
Bra005511.1-P	Field mustard	plastid	42.12	45.35
GSMUA_Achr6P36730_001	Banana	nucleus	40.0	44.75
Zm00001d005445_P001	Maize	nucleus	37.73	43.61
Zm00001d019520_P001	Maize	nucleus	37.42	37.6
PGSC0003DMT400092528	Potato	cytosol	10.45	32.24
PGSC0003DMT400054167	Potato	nucleus	23.18	31.74
PGSC0003DMT400077329	Potato	nucleus	31.21	30.7
PGSC0003DMT400018512	Potato	nucleus	31.52	28.97
PGSC0003DMT400080391	Potato	nucleus	19.39	28.51
PGSC0003DMT400080404	Potato	nucleus, plastid	24.7	26.68
PGSC0003DMT400046255	Potato	cytosol	10.76	21.65
PGSC0003DMT400054154	Potato	nucleus	25.61	19.93
PGSC0003DMT400054163	Potato	extracellular, nucleus	24.55	19.29
PGSC0003DMT400080398	Potato	nucleus	25.15	18.86
PGSC0003DMT400068351	Potato	nucleus	29.09	18.05
PGSC0003DMT400067504	Potato	nucleus	28.33	17.71
PGSC0003DMT400051920	Potato	nucleus	12.42	16.11
PGSC0003DMT400044180	Potato	nucleus	13.79	11.8

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538
GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR007728	InterPro:IPR025794
InterPro:IPR036987	UniProt:M1CUR7	PFAM:PF00856	PFAM:PF02182	PFAM:PF05033	EnsemblPlantsGene:PGSC0003DMG400029251
PGSC:PGSC0003DMG400029251	EnsemblPlants:PGSC0003DMT400075191	PFscan:PS50280	PFscan:PS50867	PFscan:PS51015	PFscan:PS51575
PANTHER:PTHR22884	PANTHER:PTHR22884:SF95	InterPro:PUA-like_sf	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317
SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199	SUPFAM:SSF88697
UniParc:UPI0002951D5C	:	:	:	:	:

Description

SET domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029251]

Coordinates

chr12:-:58607059..58611121

Molecular Weight (calculated)

74070.7 Da

IEP (calculated)

5.572

GRAVY (calculated)

-0.415

Length

660 amino acids

Sequence
(BLAST)

001: MGSVVGLEDV NFPTEPKTPT PTMIFPKIEP KLEPLDEFTP QSINPNSNFS YNSGFRNTTP QQQQNATSSQ TPSSIEAGVH SEYNRISELF QTAFAQSLQR
101: DGDVEANEDS GCRAIVPVSN EQVSDIVITR RKYEKRSSEL VRVTDLKPED ERYFRDLIRK TRMLYDSLRI FVNLEDENNQ HLGSGRQTRA RGDLKASQMM
201: REHGLWLNRD KRTVGPIPGV LVGDLFLYRM ELCVVGLHGT PQAGIDYLPA NQSSNGEPIA TSVIASGGYE DDEDAGDVII YTGQGGQDKN SRQVVHQKLE
301: GGNLALERSM YYGVEVRVIR GFKYVGSSSG KVYVYDGLYR ITESWFDVGK SGFGVYKYKL VRIENQPDMG SAVLRFAESL RTRPLEVRPM GYISLDISRK
401: KENVPVFLFN DIDNERDPAC YDYLLKTVFP PYVYQHVGNG SGCECTDGCG NGTKCFCAMK NGGQFAYDTN GILLRGKPVI FECGPHCSCP PTCWNRVSQK
501: GVRNRFEVFR SRETGWGVRS LDLLLAGSFI CEYTGVVLTQ EQAQIFTMNG DSLIYPSHFA ERWAEWGDLS RIDSNYVRPA YPSIPPLDFA MDVSRMRNLA
601: CYMSHSSSPN VLVQPVLYDH NSVSFPHLML FAMENIPPLR ELSIDYGMAD DCTGKLAICN

Best Arabidopsis Sequence Match ( AT4G13460.1 )
(BLAST)

001: MGSSHIPLDP SLNPSPSLIP KLEPVTESTQ NLAFQLPNTN PQALISSAVS DFNEATDFSS DYNTVAESAR SAFAQRLQRH DDVAVLDSLT GAIVPVEENP
101: EPEPNPYSTS DSSPSVATQR PRPQPRSSEL VRITDVGPES ERQFREHVRK TRMIYDSLRM FLMMEEAKRN GVGGRRARAD GKAGKAGSMM RDCMLWMNRD
201: KRIVGSIPGV QVGDIFFFRF ELCVMGLHGH PQSGIDFLTG SLSSNGEPIA TSVIVSGGYE DDDDQGDVIM YTGQGGQDRL GRQAEHQRLE GGNLAMERSM
301: YYGIEVRVIR GLKYENEVSS RVYVYDGLFR IVDSWFDVGK SGFGVFKYRL ERIEGQAEMG SSVLKFARTL KTNPLSVRPR GYINFDISNG KENVPVYLFN
401: DIDSDQEPLY YEYLAQTSFP PGLFVQQSGN ASGCDCVNGC GSGCLCEAKN SGEIAYDYNG TLIRQKPLIH ECGSACQCPP SCRNRVTQKG LRNRLEVFRS
501: LETGWGVRSL DVLHAGAFIC EYAGVALTRE QANILTMNGD TLVYPARFSS ARWEDWGDLS QVLADFERPS YPDIPPVDFA MDVSKMRNVA CYISHSTDPN
601: VIVQFVLHDH NSLMFPRVML FAAENIPPMT ELSLDYGVVD DWNAKLAICN

Arabidopsis Description

SUVH9Histone-lysine N-methyltransferase family member SUVH9 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0G7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.