Factsheet for PGSC0003DMT400079355

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
vacuole 5
plasma membrane 5
extracellular 6
endoplasmic reticulum 5
golgi 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g007860.1.1	Tomato	extracellular	86.86	86.23
PGSC0003DMT400007468	Potato	extracellular	69.34	39.42
Bra037196.1-P	Field mustard	endoplasmic reticulum, plasma membrane	59.85	32.28
CDX81428	Canola	endoplasmic reticulum, plasma membrane	59.85	32.03
CDY18576	Canola	endoplasmic reticulum, plasma membrane	59.85	29.29
Zm00001d002094_P001	Maize	extracellular, plastid	42.34	28.57
AT2G10940.2	Thale cress	endoplasmic reticulum, plasma membrane	59.85	28.18
PGSC0003DMT400093516	Potato	plastid	46.72	27.95
Zm00001d026436_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	39.42	26.47
Os04t0644400-01	Rice	nucleus	34.31	25.82
EES12957	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	40.15	25.35
TraesCS2B01G546700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	45.99	22.5
TraesCS2D01G519700.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	45.99	21.8
TraesCS2A01G518100.1	Wheat	endoplasmic reticulum, extracellular, plasma membrane	45.99	21.58
PGSC0003DMT400035207	Potato	extracellular	42.34	14.87
HORVU2Hr1G114680.2	Barley	endoplasmic reticulum	45.26	14.8

Protein Annotations

Gene3D:1.10.110.10	EntrezGene:102587323	MapMan:35.2	InterPro:Bifun_inhib/LTP/seed_sf	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009506	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0048046	InterPro:Hydrophob_seed	UniProt:M1D1P0
PFAM:PF14547	EnsemblPlantsGene:PGSC0003DMG400030889	PGSC:PGSC0003DMG400030889	EnsemblPlants:PGSC0003DMT400079355	PANTHER:PTHR31731	PANTHER:PTHR31731:SF54
SUPFAM:SSF47699	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002962DCD	RefSeq:XP_006358307.1	SEG:seg

Description

Lipid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030889]

Coordinates

chr7:+:4040495..4041215

Molecular Weight (calculated)

14621.7 Da

IEP (calculated)

8.090

GRAVY (calculated)

0.666

Length

137 amino acids

Sequence
(BLAST)

001: MESSKTKITT LFFIFMLLIS SLTPILGCGH CKKHKKKPII ISPPPPIEVP TTSCPIDTIK LGACVDLLGG LVHIGLGNPV VNECCPIIEG LVEIEAAVCL
101: CTTLKLKLLN LNLYVPLALQ LLLTCGKTPP PGYTCSL

Best Arabidopsis Sequence Match ( AT2G10940.2 )
(BLAST)

001: MDSSKLSSLS LCLFLICIIY LPQHSLACGS CNPRKGGKHS PKAPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTIPKLPVPP VTVPKLPVPP
101: VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPVPP VTVPKLPLPP ISGLPIPPVV GPNLPLPPLP IVGPILPPGT TPPATGGKDC PPPPGSVKPP
201: SGGGKATCPI DTLKLGACVD LLGGLVKIGL GDPAVNKCCP LLKGLVEVEA AACLCTTLKL KALDLNLYVP VALQLLLTCG KNPPPGYTCS I

Arabidopsis Description

At2g10940/F15K19.1 [Source:UniProtKB/TrEMBL;Acc:Q9SKI0]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.