Factsheet for PGSC0003DMT400080391

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g093770.1.1	Tomato	golgi, plasma membrane	62.81	69.63
PGSC0003DMT400080404	Potato	nucleus, plastid	86.86	63.83
PGSC0003DMT400092528	Potato	cytosol	30.29	63.55
PGSC0003DMT400054167	Potato	nucleus	50.56	47.1
VIT_16s0013g00310.t01	Wine grape	nucleus	37.64	36.58
PGSC0003DMT400054154	Potato	nucleus	64.37	34.08
PGSC0003DMT400080398	Potato	nucleus	64.37	32.84
PGSC0003DMT400054163	Potato	extracellular, nucleus	60.8	32.5
Bra005362.1-P	Field mustard	nucleus	28.95	31.78
VIT_16s0013g00650.t01	Wine grape	nucleus	39.2	30.24
KRG90121	Soybean	nucleus	31.4	25.54
CDY31670	Canola	nucleus	37.64	23.57
CDX84255	Canola	nucleus	37.42	23.3
TraesCS3A01G520700.1	Wheat	nucleus	14.92	23.26
CDY25627	Canola	nucleus	36.08	21.72
CDX89510	Canola	nucleus	36.3	21.5
TraesCS3B01G590300.1	Wheat	nucleus	29.84	21.34
Bra030212.1-P	Field mustard	nucleus	37.19	21.09
AT2G35160.3	Thale cress	nucleus	36.97	20.91
AT2G22740.1	Thale cress	nucleus	36.75	20.89
PGSC0003DMT400003956	Potato	nucleus	30.51	19.68
PGSC0003DMT400077329	Potato	nucleus	29.18	19.52
PGSC0003DMT400075191	Potato	nucleus	28.51	19.39
PGSC0003DMT400018512	Potato	nucleus	30.73	19.22
EES05802	Sorghum	nucleus	29.4	16.77
Os04t0544100-01	Rice	nucleus	31.18	16.65
PGSC0003DMT400068351	Potato	nucleus	39.42	16.64
PGSC0003DMT400067504	Potato	nucleus	38.75	16.48
EES12588	Sorghum	nucleus	31.4	15.82
TraesCS2B01G409600.1	Wheat	nucleus	30.07	14.03
PGSC0003DMT400046255	Potato	cytosol	10.24	14.02
TraesCS2D01G389100.1	Wheat	nucleus	29.18	13.65
TraesCS2A01G389600.1	Wheat	mitochondrion, nucleus	29.18	13.0
PGSC0003DMT400051920	Potato	nucleus	10.69	9.43
PGSC0003DMT400044180	Potato	nucleus	12.92	7.52

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	Gene3D:2.170.270.10	Gene3D:2.30.280.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0018024	GO:GO:0019538	GO:GO:0034968	InterPro:IPR003105	InterPro:IPR007728	InterPro:IPR036987
UniProt:M1D3G2	PFAM:PF02182	PFAM:PF05033	EnsemblPlantsGene:PGSC0003DMG400031304	PGSC:PGSC0003DMG400031304	EnsemblPlants:PGSC0003DMT400080391
PFscan:PS50867	PFscan:PS51015	PANTHER:PTHR22884	PANTHER:PTHR22884:SF458	InterPro:PUA-like_sf	InterPro:Pre-SET_dom
SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199	SUPFAM:SSF88697
UniParc:UPI00029682F2	:	:	:	:	:

Description

SET domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031304]

Coordinates

chr3:+:37397645..37398994

Molecular Weight (calculated)

51770.0 Da

IEP (calculated)

9.812

GRAVY (calculated)

-0.602

Length

449 amino acids

Sequence
(BLAST)

001: MIDIRSLSVF KCLRVDSINN FRPSVRQNNG NTVQQHDLSI NHKLNVPKIS SIYSRCEWFS NGGRIIDGEH IQKRKQVRET LKHFAYEYTK LLRENKAEKQ
101: GRRSKRTINI KAAMILRKQG KWVNFDWAFG HAPGVEIGDQ FRFKVQLAMV GLHHKNLKGI DYVNINRKNV ATSIVDSGLY ENETISSQKF IYVGQGGNPT
201: VSVNAKVEDQ KLQRENLALK NSMDLGYSVR VIYGRPRVNG ENTEGKYIYY GLYTVTRCWQ ERGPTGKYVF KFELQRNLGQ PELTQLVNVN HIYENVNKAT
301: KSTMQTKFVM EYDVSQGKEN IPIPVINEID DERPPPFTYI TSMQYPDWYY IIRPQGCSCT SRCSTFEQCS CASKNGGEFP FNPRSSILKE KPLVHECGPY
401: CKCPPSCKSK VSQHGLRYYF EVFKTKSKGW GLRSSNYIAP GIFICEYIR

Best Arabidopsis Sequence Match ( AT2G22740.1 )
(BLAST)

001: MEMGVMENLM VHTEISKVKS QSNGEVEKRG VSVLENGGVC KLDRMSGLKF KRRKVFAVRD FPPGCGSRAM EVKIACENGN VVEDVKVVES LVKEEESLGQ
101: RDASENVSDI RMAEPVEVQP LRICLPGGDV VRDLSVTAGD ECSNSEQIVA GSGVSSSSGT ENIVRDIVVY ADESSLGMDN LDQTQPLEIE MSDVAVAKPR
201: LVAGRKKAKK GIACHSSLKV VSREFGEGSR KKKSKKNLYW RDRESLDSPE QLRILGVGTS SGSSSGDSSR NKVKETLRLF HGVCRKILQE DEAKPEDQRR
301: KGKGLRIDFE ASTILKRNGK FLNSGVHILG EVPGVEVGDE FQYRMELNIL GIHKPSQAGI DYMKYGKAKV ATSIVASGGY DDHLDNSDVL TYTGQGGNVM
401: QVKKKGEELK EPEDQKLITG NLALATSIEK QTPVRVIRGK HKSTHDKSKG GNYVYDGLYL VEKYWQQVGS HGMNVFKFQL RRIPGQPELS WVEVKKSKSK
501: YREGLCKLDI SEGKEQSPIS AVNEIDDEKP PLFTYTVKLI YPDWCRPVPP KSCCCTTRCT EAEARVCACV EKNGGEIPYN FDGAIVGAKP TIYECGPLCK
601: CPSSCYLRVT QHGIKLPLEI FKTKSRGWGV RCLKSIPIGS FICEYVGELL EDSEAERRIG NDEYLFDIGN RYDNSLAQGM SELMLGTQAG RSMAEGDESS
701: GFTIDAASKG NVGRFINHSC SPNLYAQNVL YDHEDSRIPH VMFFAQDNIP PLQELCYDYN YALDQVRDSK GNIKQKPCFC GAAVCRRRLY

Arabidopsis Description

SUVH6Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.