Factsheet for PGSC0003DMT400080398

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054167	Potato	nucleus	51.7	94.4
Solyc03g093760.1.1	Tomato	nucleus	80.57	88.96
PGSC0003DMT400092528	Potato	cytosol	20.68	85.05
PGSC0003DMT400054154	Potato	nucleus	78.98	81.96
PGSC0003DMT400054163	Potato	extracellular, nucleus	72.61	76.07
PGSC0003DMT400080404	Potato	nucleus, plastid	45.45	65.47
PGSC0003DMT400080391	Potato	nucleus	32.84	64.37
VIT_16s0013g00310.t01	Wine grape	nucleus	27.61	52.6
Bra005362.1-P	Field mustard	nucleus	23.3	50.12
VIT_16s0013g00650.t01	Wine grape	nucleus	31.02	46.91
TraesCS3A01G520700.1	Wheat	nucleus	15.34	46.88
KRG90121	Soybean	nucleus	23.64	37.68
CDY31670	Canola	nucleus	30.57	37.52
CDX84255	Canola	nucleus	30.45	37.17
CDY25627	Canola	nucleus	30.57	36.06
CDX89510	Canola	nucleus	30.34	35.22
AT2G22740.1	Thale cress	nucleus	31.59	35.19
AT2G35160.3	Thale cress	nucleus	30.57	33.88
Bra030212.1-P	Field mustard	nucleus	29.77	33.08
TraesCS3B01G590300.1	Wheat	nucleus	23.07	32.32
PGSC0003DMT400077329	Potato	nucleus	21.25	27.87
EES05802	Sorghum	nucleus	24.43	27.32
PGSC0003DMT400068351	Potato	nucleus	32.95	27.26
Os04t0544100-01	Rice	nucleus	25.8	26.99
PGSC0003DMT400067504	Potato	nucleus	32.27	26.89
PGSC0003DMT400018512	Potato	nucleus	21.7	26.6
PGSC0003DMT400046255	Potato	cytosol	9.55	25.61
EES12588	Sorghum	nucleus	25.68	25.36
PGSC0003DMT400075191	Potato	nucleus	18.86	25.15
PGSC0003DMT400003956	Potato	nucleus	19.89	25.14
TraesCS2D01G389100.1	Wheat	nucleus	25.45	23.33
TraesCS2B01G409600.1	Wheat	nucleus	25.45	23.28
TraesCS2A01G389600.1	Wheat	mitochondrion, nucleus	25.34	22.12
PGSC0003DMT400051920	Potato	nucleus	10.0	17.29
PGSC0003DMT400044180	Potato	nucleus	11.14	12.71

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	Gene3D:2.170.270.10	Gene3D:2.30.280.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168	GO:GO:0008270
GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538
GO:GO:0032259	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR003616
InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987	UniProt:M1D3G4	PFAM:PF00856	PFAM:PF02182
PFAM:PF05033	EnsemblPlantsGene:PGSC0003DMG400031306	PGSC:PGSC0003DMG400031306	EnsemblPlants:PGSC0003DMT400080398	PFscan:PS50280	PFscan:PS50867
PFscan:PS50868	PFscan:PS51015	PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF458	InterPro:PUA-like_sf
InterPro:Post-SET_dom	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00466	SMART:SM00468
InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199	SUPFAM:SSF88697	UniParc:UPI0002951E59	SEG:seg

Description

SET domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031306]

Coordinates

chr3:+:37407211..37409853

Molecular Weight (calculated)

100288.0 Da

IEP (calculated)

6.861

GRAVY (calculated)

-0.770

Length

880 amino acids

Sequence
(BLAST)

001: MLGKKKLDLM VDTISPSTFK RLKVDATSNF PENCGSFVCQ NNGTREINLE FPSTTKPVRV ETTRSFPENC GLFVRQNNGT REMYPEFPSN TKRVKVDSTR
101: SFPENCGPCV SQKRNGSDTQ CSVDADSKSC SEVAKNVVES AESSNFEATG APPKEAGGSS HLNTSCRPTN GNQPLKLKEE NLMYDESTQH HEVQKPSTDT
201: RNTCDWFIKD EPIENEPELP AIVSQENLIE ALNEPSNETS QRVHHEEVSD NESRNWVDDD DISILTCSEW NSLRSGLKAQ STDGKKGGKE GEIIHKCSDI
301: LEDAVDFKPL PDIICPEQHD EMNKGHYFFY KDWDQYESVV MCGVSGHGLS TEYEHIHKVK EVRETLKLFD DVYTKLLRED KAEKHEGRSK RNIHIEAAMT
401: LKNQKKWVNC EWTFGHVPGV EIGDQFRFRA ELVTIGLHHQ FMNGINYVNI GRKYVATSIV DSGRYDNEAI SSETFIYVGQ GGNPKVSVNA RVEDQKLKGG
501: NLALKNSMDM GCPVRVICGR KRVNGEKSDI RYIYNGLYTV TKCWAEIAPT GKYVFKFELK RNPGQPKLNR EVVSRPTSLV KVDHFHANKA TKSIMQSEFV
601: VDYDVSQGKE KIPIRAVNAI DDERLPSFTY ITNIQYPDWY YISRPQGCNC TSGCSDSEQC SCASRNGGEI PFNTRGSIVR AQPLVYECGP SCKCPPSCKN
701: RVSQHGPRYH LEVFKTESRG WGLRSRDYVT CGRFICEYVG ELLDEKEAES RIYNDEYLFD VGNYDEEIPK RNPMRNNNLK VESDSLRRKD EDGFTLDAVR
801: YGNVGRFINH SCSPNLYAQN VMYYHGDRRV PHIMFFASKS IAPLEEFTYH YNYDHVYDKN RNLKRKNCRC GSRKCEGRMY

Best Arabidopsis Sequence Match ( AT2G22740.2 )
(BLAST)

001: MEMGVMENLM VHTEISKVKS QSNGEVEKRG VSVLENGGVC KLDRMSGLKF KRRKVFAVRD FPPGCGSRAM EVKIACENGN VVEDVKVVES LVKEEESLGQ
101: RDASENVSDI RMAEPVEVQP LRICLPGGDV VRDLSVTAGD ECSNSEQIVA GSGVSSSSGT ENIVRDIVVY ADESSLGMDN LDQTQPLEIE MSDVAVAKPR
201: LVAGRKKAKK GIACHSSLKV VSREFGEGSR KKKSKKNLYW RDRESLDSPE QLRILGVGTS SGSSSGDSSR NKVKETLRLF HGVCRKILQE DEAKPEDQRR
301: KGKGLRIDFE ASTILKRNGK FLNSGVHILG EVPGVEVGDE FQYRMELNIL GIHKPSQAGI DYMKYGKAKV ATSIVASGGY DDHLDNSDVL TYTGQGGNVM
401: QVKKKGEELK EPEDQKLITG NLALATSIEK QTPVRVIRGK HKSTHDKSKG GNYVYDGLYL VEKYWQQVGS HGMNVFKFQL RRIPGQPELS WVEVKKSKSK
501: YREGLCKLDI SEGKEQSPIS AVNEIDDEKP PLFTYTVKLI YPDWCRPVPP KSCCCTTRCT EAEARVCACV EKNGGEIPYN FDGAIVGAKP TIYECGPLCK
601: CPSSCYLRVT QHGIKLPLEI FKTKSRGWGV RCLKSIPIGS FICEYVGELL EDSEAERRIG NDEYLFDIGN RYDNSLAQGM SELMLGTQAG RSMAEGDESS
701: GFTIDAASKG NVGRFINHSC SPNLYAQNVL YDHEDSRIPH VMFFAQDNIP PLQELCYDYN YALDQVRDSK GNIKQKPCFC GAAVCRRRLY

Arabidopsis Description

SUVH6Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.