Factsheet for PGSC0003DMT400080404

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080391	Potato	nucleus	63.83	86.86
Solyc03g093740.1.1	Tomato	nucleus	40.43	80.46
PGSC0003DMT400054167	Potato	nucleus	53.52	67.84
PGSC0003DMT400092528	Potato	cytosol	22.42	64.02
VIT_16s0013g00310.t01	Wine grape	nucleus	38.46	50.87
Bra005362.1-P	Field mustard	nucleus	32.57	48.66
PGSC0003DMT400054154	Potato	nucleus	66.78	48.11
PGSC0003DMT400054163	Potato	extracellular, nucleus	64.65	47.02
PGSC0003DMT400080398	Potato	nucleus	65.47	45.45
TraesCS3A01G520700.1	Wheat	nucleus	21.28	45.14
VIT_16s0013g00650.t01	Wine grape	nucleus	40.59	42.61
KRG90121	Soybean	nucleus	32.08	35.51
CDY31670	Canola	nucleus	40.1	34.17
CDX84255	Canola	nucleus	40.1	33.98
TraesCS3B01G590300.1	Wheat	nucleus	33.06	32.17
CDX89510	Canola	nucleus	39.77	32.06
CDY25627	Canola	nucleus	39.12	32.04
AT2G22740.1	Thale cress	nucleus	39.28	30.38
AT2G35160.3	Thale cress	nucleus	39.12	30.1
Bra030212.1-P	Field mustard	nucleus	38.63	29.8
Os04t0544100-01	Rice	nucleus	36.01	26.16
EES05802	Sorghum	nucleus	33.55	26.05
PGSC0003DMT400077329	Potato	nucleus	28.48	25.93
PGSC0003DMT400046255	Potato	cytosol	13.58	25.3
PGSC0003DMT400003956	Potato	nucleus	28.48	25.0
PGSC0003DMT400018512	Potato	nucleus	29.13	24.79
PGSC0003DMT400075191	Potato	nucleus	26.68	24.7
EES12588	Sorghum	nucleus	36.01	24.69
PGSC0003DMT400068351	Potato	nucleus	42.06	24.15
PGSC0003DMT400067504	Potato	nucleus	41.41	23.96
TraesCS2B01G409600.1	Wheat	nucleus	34.86	22.14
TraesCS2D01G389100.1	Wheat	nucleus	34.37	21.88
TraesCS2A01G389600.1	Wheat	mitochondrion, nucleus	34.53	20.93
PGSC0003DMT400051920	Potato	nucleus	13.75	16.5
PGSC0003DMT400044180	Potato	nucleus	15.55	12.32

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	Gene3D:2.170.270.10	Gene3D:2.30.280.10	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987
GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0034968
InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987
UniProt:M1D3G6	PFAM:PF00856	PFAM:PF02182	PFAM:PF05033	EnsemblPlantsGene:PGSC0003DMG400031307	PGSC:PGSC0003DMG400031307
EnsemblPlants:PGSC0003DMT400080404	PFscan:PS50280	PFscan:PS50867	PFscan:PS51015	PFscan:PS51575	PANTHER:PTHR22884
PANTHER:PTHR22884:SF458	InterPro:PUA-like_sf	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00466
SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199	SUPFAM:SSF88697	UniParc:UPI0002962E5B

Description

SET domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031307]

Coordinates

chr3:+:37414533..37422633

Molecular Weight (calculated)

70381.0 Da

IEP (calculated)

9.062

GRAVY (calculated)

-0.615

Length

611 amino acids

Sequence
(BLAST)

001: MSFVPVETST SKKLQMIDTR SLSVCKRTRV DVTNNFPKNC HPSVRQNNGN TVQQHDVLIN HKLKVPKISS VYSRCEWFSN GGRIINESKF PAISEYEHIQ
101: KRKQVRETLK HFADEYTKLL GEKKAEKQGK HINIEAAMIL RKEGKWVNSE WAFGHVPGVE IGDQFRFKVE LAMVGLHHEI FRGIDYVHIN RKNVATCIVD
201: SGLYENETIS SQKFIYVGQG GNPRVSVNAR VEDQQLKRDN LALKNSMDLG YSVRVIYGRP RVNGEKIDGK YIYYGLYTVT KCWRERGPTG KYVFKFELQR
301: NLGQQELTQL VNVNHICENV NKAPKSTMQT KFVMEYDVSQ GKENIPIPTI NEIDDERPPP FTYITNMQYP DWYYIIRPQG CSCTSRCSTF DQCSCASKNG
401: GEFPFNPRSS ILKAKPLVHE CGPYCKCPPS CKNRVSQHGL GYHFEVFKTK LKGWGLRSSD YIAPGSFICE YIGELLDHKE AKIRMDYDEY FFDVGNYYEY
501: IPQRKVVSSK VESNSFKRMD EEGFTIDAAI YGNVGRFINH SCSPNLCAQN VMYDHGDKRV PHIMFFASKS IYPLEELTYH YNHRIVRVHD TNGNLKREKG
601: KCGSHKCSGR M

Best Arabidopsis Sequence Match ( AT2G22740.1 )
(BLAST)

001: MEMGVMENLM VHTEISKVKS QSNGEVEKRG VSVLENGGVC KLDRMSGLKF KRRKVFAVRD FPPGCGSRAM EVKIACENGN VVEDVKVVES LVKEEESLGQ
101: RDASENVSDI RMAEPVEVQP LRICLPGGDV VRDLSVTAGD ECSNSEQIVA GSGVSSSSGT ENIVRDIVVY ADESSLGMDN LDQTQPLEIE MSDVAVAKPR
201: LVAGRKKAKK GIACHSSLKV VSREFGEGSR KKKSKKNLYW RDRESLDSPE QLRILGVGTS SGSSSGDSSR NKVKETLRLF HGVCRKILQE DEAKPEDQRR
301: KGKGLRIDFE ASTILKRNGK FLNSGVHILG EVPGVEVGDE FQYRMELNIL GIHKPSQAGI DYMKYGKAKV ATSIVASGGY DDHLDNSDVL TYTGQGGNVM
401: QVKKKGEELK EPEDQKLITG NLALATSIEK QTPVRVIRGK HKSTHDKSKG GNYVYDGLYL VEKYWQQVGS HGMNVFKFQL RRIPGQPELS WVEVKKSKSK
501: YREGLCKLDI SEGKEQSPIS AVNEIDDEKP PLFTYTVKLI YPDWCRPVPP KSCCCTTRCT EAEARVCACV EKNGGEIPYN FDGAIVGAKP TIYECGPLCK
601: CPSSCYLRVT QHGIKLPLEI FKTKSRGWGV RCLKSIPIGS FICEYVGELL EDSEAERRIG NDEYLFDIGN RYDNSLAQGM SELMLGTQAG RSMAEGDESS
701: GFTIDAASKG NVGRFINHSC SPNLYAQNVL YDHEDSRIPH VMFFAQDNIP PLQELCYDYN YALDQVRDSK GNIKQKPCFC GAAVCRRRLY

Arabidopsis Description

SUVH6Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ17]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.