Factsheet for PGSC0003DMT400084945

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g050730.1.1	Tomato	nucleus	82.13	84.58
Solyc10g019150.1.1	Tomato	nucleus	53.14	67.07
PGSC0003DMT400071438	Potato	nucleus	57.97	55.56
PGSC0003DMT400086641	Potato	nucleus	32.85	34.17
PGSC0003DMT400092914	Potato	nucleus	17.87	32.74
PGSC0003DMT400047912	Potato	nucleus	29.95	31.16
PGSC0003DMT400091420	Potato	nucleus	18.84	16.88
PGSC0003DMT400086891	Potato	nucleus	17.39	16.67
PGSC0003DMT400085069	Potato	nucleus	6.28	11.71
PGSC0003DMT400091980	Potato	nucleus	19.32	9.93

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:107058756	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1D8F1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400034516	PGSC:PGSC0003DMG400034516	EnsemblPlants:PGSC0003DMT400084945	PFscan:PS51294	PANTHER:PTHR44377	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI0002960235	RefSeq:XP_015160343.1	SEG:seg

Description

Myb family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400034516]

Coordinates

chr11:-:15068163..15068786

Molecular Weight (calculated)

23289.4 Da

IEP (calculated)

9.638

GRAVY (calculated)

-0.750

Length

207 amino acids

Sequence
(BLAST)

001: MERNCTVCGG NGHNQRTCSE KGKSIKLFGV EITATAGGAM SKKDSSERRI KKGNPWMEDE QKAFLKGLDF HGKGNWAKIA KDFVPSRTST QVASHAQKYF
101: MRLLDANERK YRKKSSVFDL RLDQLEDTHD AIVPLGNDQE SHNVPSVVPN YYMMKRVLPL NWVYMYPYYH HDNASTSASA TTFNKPLSGI SSSSNSSSKE
201: NNLELTL

Best Arabidopsis Sequence Match ( AT5G47390.1 )
(BLAST)

001: MTRRCSHCNH NGHNSRTCPN RGVKLFGVRL TEGSIRKSAS MGNLSHYTGS GSGGHGTGSN TPGSPGDVPD HVAGDGYASE DFVAGSSSSR ERKKGTPWTE
101: EEHRMFLLGL QKLGKGDWRG ISRNYVTTRT PTQVASHAQK YFIRQSNVSR RKRRSSLFDM VPDEVGDIPM DLQEPEEDNI PVETEMQGAD SIHQTLAPSS
201: LHAPSILEIE ECESMDSTNS TTGEPTATAA AASSSSRLEE TTQLQSQLQP QPQLPGSFPI LYPTYFSPYY PFPFPIWPAG YVPEPPKKEE THEILRPTAV
301: HSKAPINVDE LLGMSKLSLA ESNKHGESDQ SLSLKLGGGS SSRQSAFHPN PSSDSSDIKS VIHAL

Arabidopsis Description

KUA1Transcription factor KUA1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVS0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.