Factsheet for PGSC0003DMT400085069

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071438	Potato	nucleus	12.61	6.48
PGSC0003DMT400084945	Potato	nucleus	11.71	6.28
PGSC0003DMT400092914	Potato	nucleus	6.31	6.19
PGSC0003DMT400047912	Potato	nucleus	7.21	4.02
PGSC0003DMT400086641	Potato	nucleus	7.21	4.02
PGSC0003DMT400091420	Potato	nucleus	7.21	3.46
PGSC0003DMT400086891	Potato	nucleus	5.41	2.78
PGSC0003DMT400091980	Potato	nucleus	9.01	2.48
TraesCS7A01G135600.1	Wheat	cytosol	4.5	2.35

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:107058472	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M1D8P1	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400034640	PGSC:PGSC0003DMG400034640	EnsemblPlants:PGSC0003DMT400085069	PFscan:PS51294	PANTHER:PTHR12374	PANTHER:PTHR12374:SF26
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000294AE1E	RefSeq:XP_015159699.1
SEG:seg	:	:	:	:	:

Description

Myb family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400034640]

Coordinates

chr11:-:9539683..9540018

Molecular Weight (calculated)

12639.0 Da

IEP (calculated)

10.917

GRAVY (calculated)

-0.874

Length

111 amino acids

Sequence
(BLAST)

001: MDRNCSENGK SIKLFGFEIT TTTTSSAAAL TSEKDFMGRK IKKGNRWTED EQRAFLKGLN FHGKGNWTNI AKDFVPSRTS TQVASHAQKY FLRLLDANSN
101: ERKKRKKSSV F

Best Arabidopsis Sequence Match ( AT5G61620.1 )
(BLAST)

001: MVKETVTVAK TCSHCGHNGH NARTCLNGVN KASVKLFGVN ISSDPIRPPE VTALRKSLSL GNLDALLAND ESNGSGDPIA AVDDTGYHSD GQIHSKKGKT
101: AHEKKKGKPW TEEEHRNFLI GLNKLGKGDW RGIAKSFVST RTPTQVASHA QKYFIRLNVN DKRKRRASLF DISLEDQKEK ERNSQDASTK TPPKQPITGI
201: QQPVVQGHTQ TEISNRFQNL SMEYMPIYQP IPPYYNFPPI MYHPNYPMYY ANPQVPVRFV HPSGIPVPRH IPIGLPLSQP SEASNMTNKD GLDLHIGLPP
301: QATGASDLTG HGVIHVK

Arabidopsis Description

Probable transcription factor At5g61620 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.