Factsheet for PGSC0003DMT400086891

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086641	Potato	nucleus	22.69	24.62
TraesCS7B01G093600.1	Wheat	nucleus	17.59	21.11
TraesCS1B01G283000.1	Wheat	nucleus	17.13	20.56
PGSC0003DMT400092914	Potato	nucleus	10.19	19.47
HORVU7Hr1G028140.1	Barley	nucleus	19.44	19.44
TraesCS7D01G189800.2	Wheat	nucleus	17.59	19.19
PGSC0003DMT400071438	Potato	nucleus	18.98	18.98
TraesCS7A01G188800.1	Wheat	nucleus	15.74	18.78
PGSC0003DMT400047912	Potato	nucleus	17.13	18.59
HORVU7Hr1G038390.1	Barley	mitochondrion, nucleus, plastid	17.59	18.54
Zm00001d006791_P001	Maize	nucleus	12.96	18.3
PGSC0003DMT400084945	Potato	nucleus	16.67	17.39
KXG21281	Sorghum	nucleus	12.96	16.18
Zm00001d050594_P001	Maize	nucleus	15.28	15.64
HORVU7Hr1G024150.1	Barley	nucleus	17.13	15.55
PGSC0003DMT400091420	Potato	nucleus	16.2	15.15
PGSC0003DMT400091980	Potato	nucleus	28.24	15.14
TraesCS7B01G019400.1	Wheat	nucleus	16.2	14.64
KXG21283	Sorghum	nucleus	16.2	14.34
Zm00001d010889_P001	Maize	plastid	15.74	14.11
EES18995	Sorghum	nucleus	17.59	13.77
TraesCS7A01G120900.1	Wheat	nucleus	16.2	13.57
EER94504	Sorghum	nucleus	18.06	13.54
OQU77390	Sorghum	nucleus	15.28	13.52
TraesCS7D01G108000.1	Wheat	nucleus	17.13	13.5
TraesCS7A01G121100.1	Wheat	nucleus	17.13	13.5
TraesCS7B01G019200.1	Wheat	nucleus	17.13	13.5
OQU76057	Sorghum	nucleus	18.98	13.36
EER89573	Sorghum	nucleus	19.44	13.29
Zm00001d024809_P001	Maize	nucleus	17.13	12.94
EES18996	Sorghum	nucleus	17.13	12.85
TraesCS7D01G108100.1	Wheat	nucleus	15.74	12.45
HORVU7Hr1G025580.1	Barley	cytosol, nucleus, plastid	17.13	12.42
TraesCS7D01G118600.1	Wheat	nucleus	15.74	12.41
EER88196	Sorghum	nucleus	18.06	12.34
Zm00001d045162_P001	Maize	nucleus	15.74	11.72
EER88198	Sorghum	nucleus	16.67	11.32
Zm00001d021415_P001	Maize	nucleus	18.06	11.3
TraesCS1D01G362000.1	Wheat	nucleus	15.74	11.18
EER89299	Sorghum	nucleus	15.74	11.11
EER89387	Sorghum	nucleus	16.2	11.01
TraesCS7A01G135300.1	Wheat	nucleus	14.81	10.96
KXG36349	Sorghum	nucleus	18.52	10.9
HORVU1Hr1G080380.1	Barley	nucleus	16.67	10.68
OQU89906	Sorghum	nucleus	16.2	10.39
TraesCS1A01G357600.1	Wheat	nucleus	16.67	10.29
OQU77389	Sorghum	nucleus	15.74	10.18
TraesCS1B01G374300.1	Wheat	nucleus	16.2	10.0
Zm00001d024810_P001	Maize	nucleus	17.59	9.74
Zm00001d024814_P001	Maize	nucleus	12.5	9.61
TraesCS7A01G135000.1	Wheat	nucleus	18.98	9.56
TraesCS7D01G135000.1	Wheat	nucleus	18.98	9.53
TraesCS7B01G036500.1	Wheat	nucleus	18.98	9.53
TraesCS2D01G567700.1	Wheat	nucleus	16.67	9.52
TraesCS7D01G135500.1	Wheat	nucleus	17.59	9.48
KXG21278	Sorghum	nucleus	14.81	9.3
KXG21280	Sorghum	nucleus	15.28	9.27
Os06t0173800-00	Rice	vacuole	13.89	9.17
TraesCS7D01G135200.1	Wheat	nucleus	18.06	9.09
EES18997	Sorghum	nucleus	15.74	9.04
TraesCS7D01G135700.1	Wheat	nucleus	18.06	8.97
TraesCS7B01G036700.1	Wheat	nucleus	17.59	8.88
TraesCS7A01G135200.1	Wheat	nucleus	17.59	8.86
TraesCS7A01G135100.1	Wheat	nucleus	17.59	8.86
TraesCS2B01G617700.1	Wheat	nucleus	16.2	8.77
TraesCS7D01G135300.1	Wheat	nucleus	17.13	8.6
TraesCS7A01G135400.1	Wheat	nucleus	17.13	8.6
TraesCS7D01G135600.1	Wheat	nucleus	11.57	7.02
PGSC0003DMT400085069	Potato	nucleus	2.78	5.41

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017930	UniProt:M1DCQ3	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249	EnsemblPlantsGene:PGSC0003DMG400036462
PGSC:PGSC0003DMG400036462	EnsemblPlants:PGSC0003DMT400086891	PFscan:PS51294	PANTHER:PTHR12374	PANTHER:PTHR12374:SF26	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000294B3D5	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400036462]

Coordinates

chr2:-:38131603..38132672

Molecular Weight (calculated)

24817.2 Da

IEP (calculated)

5.507

GRAVY (calculated)

-0.697

Length

216 amino acids

Sequence
(BLAST)

001: MEVLNNTPPP EVENMEVLNE TPPPQAQNME VLNDTPPPQV QNMEVHNGTS PHRRRVILWT EEEHRLFLIG LYTLGKGNWK DISKEYVVSK TARQVGSHAQ
101: KFFSRMNCKT PVERRRASIN DIRTITSNPM TPIIVPMDHQ VNSDIPTHIN NHQIASFLQP ESYPYTFGVP YLNNNPNNQV EAYDNNSLVM DQIPNGHNFE
201: ILNHVEAYDN NSFVMD

Best Arabidopsis Sequence Match ( AT1G49010.1 )
(BLAST)

001: MESVVATWSR EEEKAFENAI ALHCVEEEIT EDQWNKMSSM VPSKALEEVK KHYQILLEDV KAIENGQVPL PRYHHRKGLI VDEAAAAATS PANRDSHSSG
101: SSEKKPNPGT SGISSSNGGR SGGSRAEQER RKGIPWTEEE HRLFLLGLDK FGKGDWRSIS RNFVISRTPT QVASHAQKYF IRLNSMNRDR RRSSIHDITT
201: VNNQAPAVTG GGQQPQVVKH RPAQPQPQPQ PQPQQHHPPT MAGLGMYGGA PVGQPIIAPP DHMGSAVGTP VMLPPPMGTH HHHHHHHLGV APYAVPAYPV
301: PPLPQQHPAP STMH

Arabidopsis Description

At1g49010 [Source:UniProtKB/TrEMBL;Acc:Q9M9A3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.