Factsheet for PGSC0003DMT400091980

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082380.1.1	Tomato	nucleus	33.99	61.71
Solyc02g082390.1.1	Tomato	nucleus	39.7	56.94
PGSC0003DMT400086891	Potato	nucleus	15.14	28.24
PGSC0003DMT400092914	Potato	nucleus	6.7	23.89
PGSC0003DMT400086641	Potato	nucleus	11.17	22.61
PGSC0003DMT400047912	Potato	nucleus	10.92	22.11
TraesCS1B01G283000.1	Wheat	nucleus	9.43	21.11
TraesCS7B01G093600.1	Wheat	nucleus	9.18	20.56
PGSC0003DMT400071438	Potato	nucleus	10.92	20.37
TraesCS7A01G188800.1	Wheat	nucleus	8.68	19.34
PGSC0003DMT400084945	Potato	nucleus	9.93	19.32
TraesCS7D01G189800.2	Wheat	nucleus	9.18	18.69
KXG21281	Sorghum	nucleus	7.69	17.92
Zm00001d006791_P001	Maize	nucleus	6.7	17.65
HORVU7Hr1G028140.1	Barley	nucleus	9.43	17.59
PGSC0003DMT400091420	Potato	nucleus	9.93	17.32
HORVU7Hr1G038390.1	Barley	mitochondrion, nucleus, plastid	8.68	17.07
HORVU7Hr1G024150.1	Barley	nucleus	9.43	15.97
Zm00001d010889_P001	Maize	plastid	9.43	15.77
Zm00001d050594_P001	Maize	nucleus	8.19	15.64
KXG21283	Sorghum	nucleus	9.43	15.57
TraesCS7D01G108000.1	Wheat	nucleus	10.42	15.33
OQU77390	Sorghum	nucleus	9.18	15.16
EER94504	Sorghum	nucleus	10.67	14.93
TraesCS7A01G120900.1	Wheat	nucleus	9.43	14.73
TraesCS7B01G019400.1	Wheat	nucleus	8.68	14.64
Zm00001d021415_P001	Maize	nucleus	12.41	14.49
TraesCS7D01G118600.1	Wheat	nucleus	9.68	14.23
TraesCS7B01G019200.1	Wheat	nucleus	9.68	14.23
TraesCS7A01G121100.1	Wheat	nucleus	9.68	14.23
TraesCS7D01G108100.1	Wheat	nucleus	9.43	13.92
KXG36349	Sorghum	nucleus	12.66	13.9
TraesCS1D01G362000.1	Wheat	nucleus	10.42	13.82
EER88196	Sorghum	nucleus	10.42	13.29
Zm00001d045162_P001	Maize	nucleus	9.43	13.1
EER89299	Sorghum	nucleus	9.93	13.07
Zm00001d024809_P001	Maize	nucleus	9.18	12.94
EER88198	Sorghum	nucleus	10.17	12.89
EES18996	Sorghum	nucleus	9.18	12.85
HORVU7Hr1G025580.1	Barley	cytosol, nucleus, plastid	9.43	12.75
OQU76057	Sorghum	nucleus	9.68	12.7
EER89573	Sorghum	nucleus	9.93	12.66
EER89387	Sorghum	nucleus	9.93	12.58
TraesCS1B01G374300.1	Wheat	nucleus	10.42	12.0
EES18995	Sorghum	nucleus	8.19	11.96
TraesCS1A01G357600.1	Wheat	nucleus	9.93	11.43
TraesCS7A01G135300.1	Wheat	nucleus	8.19	11.3
HORVU1Hr1G080380.1	Barley	nucleus	9.43	11.28
OQU89906	Sorghum	nucleus	9.43	11.28
TraesCS2D01G567700.1	Wheat	nucleus	9.93	10.58
OQU77389	Sorghum	nucleus	8.68	10.48
TraesCS7D01G135500.1	Wheat	nucleus	10.42	10.47
Os06t0173800-00	Rice	vacuole	8.44	10.4
Zm00001d024814_P001	Maize	nucleus	7.2	10.32
TraesCS7A01G135000.1	Wheat	nucleus	10.92	10.26
TraesCS7B01G036500.1	Wheat	nucleus	10.92	10.23
TraesCS7B01G036700.1	Wheat	nucleus	10.67	10.05
TraesCS7D01G135200.1	Wheat	nucleus	10.67	10.02
TraesCS7D01G135000.1	Wheat	nucleus	10.67	10.0
TraesCS7D01G135700.1	Wheat	nucleus	10.67	9.89
KXG21280	Sorghum	nucleus	8.68	9.83
TraesCS2B01G617700.1	Wheat	nucleus	9.68	9.77
KXG21278	Sorghum	nucleus	8.19	9.59
EES18997	Sorghum	nucleus	8.93	9.57
TraesCS7A01G135400.1	Wheat	nucleus	10.17	9.53
TraesCS7A01G135100.1	Wheat	nucleus	9.93	9.32
TraesCS7A01G135200.1	Wheat	nucleus	9.93	9.32
TraesCS7D01G135300.1	Wheat	nucleus	9.93	9.3
Zm00001d024810_P001	Maize	nucleus	8.93	9.23
PGSC0003DMT400085069	Potato	nucleus	2.48	9.01
TraesCS7D01G135600.1	Wheat	nucleus	7.2	8.15

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017884	InterPro:IPR017930	UniProt:M1DNU3	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
EnsemblPlantsGene:PGSC0003DMG400041551	PGSC:PGSC0003DMG400041551	EnsemblPlants:PGSC0003DMT400091980	PFscan:PS51293	PFscan:PS51294	InterPro:SANT/Myb
InterPro:SANT_dom	SMART:SM00717	SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI000294BA41	SEG:seg

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400041551]

Coordinates

chr2:-:38142066..38143993

Molecular Weight (calculated)

46150.2 Da

IEP (calculated)

8.440

GRAVY (calculated)

-0.942

Length

403 amino acids

Sequence
(BLAST)

001: MDWPEFLESS NLQEPTIDLY GVSPQDNHEV TAQTDRWTPE EKQVFENAFS RYNNLGSQTF FEFIASKLPH KSMEEMKNLY INLFKEVEME NSLKNKNVVV
101: GDVVDDHQHH QVPQEDNSSD KEANLNGTPS RVEISRSRHH RRGIPWTEGE HSKINIFSVK NFICYFVIDF NKNVVVGDVV DDHHQQHHQV PQEDNSSDKE
201: TNLNDTPPRA EISPSRRRQW GIPWTKGEHS LFLMGLNKFG KGDWKSISRH YVVSKTPTQV ASHAQKYFSR RTSKTPVDRR RPSINDIQTV TLNSRRTTTT
301: TTTTTVTTTP QINNNILAYN NNYQVGSSSR PFHHSNYTFG GPTFANNSNG NFGSYLRGEA SGSNSFVMEQ SNNNNNNNLR RPVSPRPFLS MYLSSTRGNN
401: PQV

Best Arabidopsis Sequence Match ( AT5G58900.1 )
(BLAST)

001: MEVMRPSTSH VSGGNWLMEE TKSGVAASGE GATWTAAENK AFENALAVYD DNTPDRWQKV AAVIPGKTVS DVIRQYNDLE ADVSSIEAGL IPVPGYITSP
101: PFTLDWAGGG GGCNGFKPGH QVCNKRSQAG RSPELERKKG VPWTEEEHKL FLMGLKKYGK GDWRNISRNF VITRTPTQVA SHAQKYFIRQ LSGGKDKRRA
201: SIHDITTVNL EEEASLETNK SSIVVGDQRS RLTAFPWNQT DNNGTQADAF NITIGNAISG VHSYGQVMIG GYNNADSCYD AQNTMFQL

Arabidopsis Description

Homeodomain-like transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q9FIL9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.