Factsheet for Solyc01g105780.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	golgi, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083794	Potato	nucleus	65.69	63.39
Solyc11g006170.1.1	Tomato	nucleus	41.56	45.92
Bra031921.1-P	Field mustard	cytosol	22.87	44.44
Solyc07g007230.2.1	Tomato	nucleus	26.36	44.37
CDY31322	Canola	cytosol	22.87	43.97
KRH42098	Soybean	nucleus	25.94	40.88
VIT_03s0017g00300.t01	Wine grape	nucleus	27.62	40.74
AT5G09540.1	Thale cress	nucleus	15.34	39.29
CDY21586	Canola	cytosol	15.62	38.75
KRH21766	Soybean	nucleus	26.64	38.28
Bra009389.1-P	Field mustard	cytosol	15.48	37.88
CDY69792	Canola	cytosol	15.48	37.88
KRH49811	Soybean	nucleus	24.83	37.79
AT5G64360.7	Thale cress	nucleus	24.41	37.72
KRH10601	Soybean	nucleus	25.94	37.42
Solyc11g006140.1.1	Tomato	nucleus	30.96	37.31
CDX84519	Canola	nucleus	24.55	37.05
Bra024289.1-P	Field mustard	nucleus	23.43	36.6
CDY58269	Canola	nucleus	23.85	34.06
Solyc04g076270.1.1	Tomato	nucleus	17.29	33.33
GSMUA_Achr3P06790_001	Banana	cytosol	14.37	31.69
GSMUA_Achr10P...	Banana	cytosol	17.85	30.4
EER92178	Sorghum	nucleus	17.02	30.27
Zm00001d047214_P001	Maize	extracellular	16.6	29.97
Zm00001d029409_P001	Maize	nucleus, peroxisome, plastid	16.18	29.29
TraesCS4D01G156000.1	Wheat	nucleus	16.32	29.18
HORVU4Hr1G039650.1	Barley	nucleus	16.18	29.15
CDY46799	Canola	nucleus	15.76	28.83
GSMUA_Achr1P21390_001	Banana	cytosol	16.18	28.78
TraesCS4B01G160100.1	Wheat	cytosol	15.9	28.43
Os03t0392400-01	Rice	nucleus	16.04	28.4
TraesCS4A01G160900.1	Wheat	cytosol	15.76	28.25
Os07t0620200-01	Rice	cytosol, mitochondrion, nucleus	14.92	27.02
KXG36712	Sorghum	cytosol	15.62	25.75
Zm00001d022168_P001	Maize	cytosol, mitochondrion, peroxisome	15.48	25.11
TraesCS2B01G191300.1	Wheat	cytosol	13.67	25.0
HORVU2Hr1G030250.2	Barley	cytosol	13.53	24.94
Solyc11g010540.1.1	Tomato	cytosol	12.97	24.87
TraesCS2A01G165100.1	Wheat	cytosol	13.39	24.55
Os09t0463700-01	Rice	nucleus	12.69	24.46
TraesCS2D01G172200.1	Wheat	cytosol	13.25	24.3
KXG35797	Sorghum	nucleus	12.27	22.92
EES14021	Sorghum	nucleus	14.09	22.85
Zm00001d020762_P001	Maize	nucleus	13.81	22.5
Zm00001d047043_P001	Maize	nucleus	13.39	22.17
HORVU5Hr1G055620.1	Barley	cytosol, nucleus, plastid	7.95	19.26
CDY45966	Canola	nucleus	19.8	19.09
Bra027007.1-P	Field mustard	nucleus	19.67	18.9
CDY45473	Canola	nucleus	19.53	18.72
TraesCS5B01G242900.1	Wheat	cytosol	13.25	18.03
TraesCS5D01G252200.1	Wheat	cytosol, nucleus, plastid	12.97	17.65
TraesCS5A01G245400.1	Wheat	cytosol, nucleus, plastid	12.97	17.61
HORVU5Hr1G069570.1	Barley	nucleus	13.39	17.58
AT1G62970.1	Thale cress	nucleus	19.25	17.31

Protein Annotations

Gene3D:1.10.287.110	MapMan:12.5.1.16.2	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
UniProt:K4B2E8	PFAM:PF00226	ScanProsite:PS00636	PFscan:PS50076	SMART:SM00271	SUPFAM:SSF46565
EnsemblPlantsGene:Solyc01g105780.2	EnsemblPlants:Solyc01g105780.2.1	UniParc:UPI0002769155	SEG:seg	:	:

Description

No Description!

Coordinates

chr1:-:93825919..93828542

Molecular Weight (calculated)

78874.4 Da

IEP (calculated)

8.280

GRAVY (calculated)

-0.728

Length

717 amino acids

Sequence
(BLAST)

001: MEHPFFMNGA GNTSRAEAIR WLSIAEKLLT NRDLVGSKSF ATRAHESDPT LLPADQILAI VDTLIAGDKR INNQHLDYYS ILQIPSNQTH DSELIANQYR
101: RLALLLNPQK NNFPFSDHAF HLVVDAWSVL SNAFRRSVYD KEIGFFLNLN PVSSPPPPTN NPVGFMQQSS MIFQSQPQSH PVSSVPSSSS RERQTVTFLQ
201: DPQPQPMTSV TSLTREQQPV TFLSRNQTQP VSSTMLSPDR EQHPFTFGSS TTRGGQQQVA SVDSTRGQHR VASMESRREQ QEVVSVHQQG NKQAPQRNEG
301: LLGNNQNFSA STSRNVNNEG LFGNNQNHSG KNVNNAGLFG NNQNHSASIS KNANNAGLFG NNQNHSASIS KNVNDEGLFG NNQNQSASTN RNVNNEGLFG
401: SNQNQSANTS HNNVNNEVFF GNNQNHSVSS SNNNVRGKER GADASSPAVP SFWTACPYCY LMYEYPLEYV DCTLRCQKCK RAFQAVKIAS PPPIIEGQEA
501: YFCCWGFMPL GFSLEIFKKY KGNISSWTPF APMFNKHGGV RKPSAPRVYI DDYEDVFLGL SESSEESDED WKGDNKMKKA KSGKRKSKRF RRKKGKMQKS
601: DKGKNVVGNA GDDVQDVSVT QGGVEVPNVT TAQSSKRAGN ARRQAGRVTK DVGKLDLNVE FSNEVEEPPA PGVGQGNGAG TGEDGNIEGI EFFEGLDEFL
701: SSLPILNAVG DDKVKAA

Best Arabidopsis Sequence Match ( AT5G64360.4 )
(BLAST)

001: MVGGRGGVGG GGGNRVEADQ WLVTSEKLLA SSDLQGAKTF AIRACEADPT RAEAADYILA ICDILLAGET RLGDSNLPDW YAVLRLGRLA QNPEHVATQY
101: RRLALLLNPS VNRLPFADRA LKIVSDAWFV LSDPFKKSFY DRELQLSQLG QSGFHPQTQS HQNFQWEPSS STAVYPPPRS QSQAGTSADP MATSFWTACP
201: YCFVLFEYPK AYEECTLKCQ ECRRAFQAVT IPKPPVDKKD DEDVYFCSWA LFPLGFSGEF QAPSWSPISP LFACPLQKLD GEPKKRKEPG PPRIYYDDDD
301: IYVAISDGDD AGDDGDWQDV VQVNKKTNVG KGKETYVRSN KKHGVEEVQN VESISSASNH AVSIASNAAA VGSSTGVMSK PGSYITRKRM GTGAKNLGRL
401: DLNVEFSNEV EEPGVAGGGN AGNGIGSNRE VDNMEGIGFF EGLDEFLNSL PILSVVGDDK IKAT

Arabidopsis Description

AT5G64360 protein [Source:UniProtKB/TrEMBL;Acc:Q9FMF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.