Factsheet for Solyc02g082390.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g082380.1.1	Tomato	nucleus	65.12	82.43
PGSC0003DMT400091980	Potato	nucleus	56.94	39.7
Solyc10g019150.1.1	Tomato	nucleus	13.52	23.17
Solyc05g013420.1.1	Tomato	nucleus	14.59	22.16
TraesCS1B01G283000.1	Wheat	nucleus	13.88	21.67
TraesCS7B01G093600.1	Wheat	nucleus	13.88	21.67
Solyc11g013560.1.1	Tomato	nucleus	15.66	21.36
TraesCS7A01G188800.1	Wheat	nucleus	13.17	20.44
Solyc11g050730.1.1	Tomato	nucleus	14.23	19.9
TraesCS7D01G189800.2	Wheat	nucleus	13.52	19.19
HORVU7Hr1G028140.1	Barley	nucleus	14.23	18.52
Zm00001d006791_P001	Maize	nucleus	9.96	18.3
HORVU7Hr1G038390.1	Barley	mitochondrion, nucleus, plastid	12.81	17.56
Solyc05g013430.1.1	Tomato	nucleus	12.81	17.14
KXG21281	Sorghum	nucleus	10.32	16.76
Solyc11g013620.1.1	Tomato	plasma membrane	14.59	16.21
Zm00001d050594_P001	Maize	nucleus	11.74	15.64
HORVU7Hr1G024150.1	Barley	nucleus	12.81	15.13
TraesCS7B01G019400.1	Wheat	nucleus	12.81	15.06
KXG36349	Sorghum	nucleus	19.57	14.99
Zm00001d010889_P001	Maize	plastid	12.81	14.94
OQU77390	Sorghum	nucleus	12.81	14.75
TraesCS7A01G120900.1	Wheat	nucleus	13.52	14.73
TraesCS7D01G108000.1	Wheat	nucleus	14.23	14.6
Zm00001d021415_P001	Maize	nucleus	17.79	14.49
KXG21283	Sorghum	nucleus	12.46	14.34
TraesCS7D01G118600.1	Wheat	nucleus	13.88	14.23
TraesCS7B01G019200.1	Wheat	nucleus	13.88	14.23
TraesCS1D01G362000.1	Wheat	nucleus	15.3	14.14
TraesCS7D01G108100.1	Wheat	nucleus	13.52	13.92
EER94504	Sorghum	nucleus	14.23	13.89
TraesCS7A01G121100.1	Wheat	nucleus	13.52	13.87
EER88196	Sorghum	nucleus	15.3	13.61
Zm00001d045162_P001	Maize	nucleus	13.88	13.45
EES18995	Sorghum	nucleus	12.81	13.04
EER89573	Sorghum	nucleus	14.59	12.97
EES18996	Sorghum	nucleus	13.17	12.85
EER89299	Sorghum	nucleus	13.88	12.75
OQU76057	Sorghum	nucleus	13.88	12.7
Zm00001d024809_P001	Maize	nucleus	12.81	12.59
TraesCS1B01G374300.1	Wheat	nucleus	15.66	12.57
HORVU7Hr1G025580.1	Barley	cytosol, nucleus, plastid	13.17	12.42
TraesCS1A01G357600.1	Wheat	nucleus	15.3	12.29
HORVU1Hr1G080380.1	Barley	nucleus	14.59	12.17
EER88198	Sorghum	nucleus	13.52	11.95
EER89387	Sorghum	nucleus	13.52	11.95
OQU77389	Sorghum	nucleus	13.88	11.68
TraesCS7A01G135300.1	Wheat	nucleus	12.1	11.64
OQU89906	Sorghum	nucleus	13.52	11.28
KXG21278	Sorghum	nucleus	13.52	11.05
KXG21280	Sorghum	nucleus	13.52	10.67
Zm00001d024814_P001	Maize	nucleus	10.32	10.32
TraesCS7D01G135500.1	Wheat	nucleus	14.59	10.22
EES18997	Sorghum	nucleus	13.52	10.11
TraesCS2D01G567700.1	Wheat	nucleus	13.52	10.05
Zm00001d024810_P001	Maize	nucleus	13.88	10.0
TraesCS7B01G036500.1	Wheat	nucleus	15.3	10.0
TraesCS7D01G135000.1	Wheat	nucleus	15.3	10.0
TraesCS7B01G036700.1	Wheat	nucleus	14.95	9.81
TraesCS7D01G135200.1	Wheat	nucleus	14.95	9.79
TraesCS7A01G135000.1	Wheat	nucleus	14.95	9.79
TraesCS7D01G135700.1	Wheat	nucleus	14.95	9.66
Os06t0173800-00	Rice	vacuole	11.03	9.48
TraesCS7A01G135400.1	Wheat	nucleus	13.88	9.07
TraesCS2B01G617700.1	Wheat	nucleus	12.81	9.02
TraesCS7A01G135100.1	Wheat	nucleus	13.52	8.86
TraesCS7D01G135300.1	Wheat	nucleus	13.52	8.84
TraesCS7A01G135200.1	Wheat	nucleus	12.81	8.39
TraesCS7D01G135600.1	Wheat	nucleus	9.96	7.87

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf
InterPro:IPR017884	InterPro:IPR017930	UniProt:K4BAA9	InterPro:Myb_dom	InterPro:Myb_dom_plants	PFAM:PF00249
PFscan:PS51293	PFscan:PS51294	PANTHER:PTHR44042	InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717
SUPFAM:SSF46689	EnsemblPlantsGene:Solyc02g082390.1	EnsemblPlants:Solyc02g082390.1.1	TIGRFAMs:TIGR01557	UniParc:UPI0002767F1A	SEG:seg

Description

No Description!

Coordinates

chr2:-:46071139..46072152

Molecular Weight (calculated)

31941.8 Da

IEP (calculated)

9.728

GRAVY (calculated)

-0.975

Length

281 amino acids

Sequence
(BLAST)

001: MNWPEFLESS NPQEPTIDLS QTNRWTPEEK QVFENAFSRF NNLGSQTFFE FVASKFPHKS MEEMKNLYIN LFKEAEMENP SINTNVVDNS SDKEANPNDT
101: PPPPVQITHS RPHRRGIPWT EGEHSLFLMG LNKFGRGDWK SISRHYVVSK TPTQVASHAQ KYFCRRNSKT PVDRRRPSIN DIQTVSVNST RTTTTTASNN
201: NDQVGSSSRP FRYANYTFGG PTFANNSNGN FGIYHPGEAS GSNSFIMKQN NNNNNDLHRP VSPRPFHSMY LSSTKGNNPQ V

Best Arabidopsis Sequence Match ( AT5G08520.1 )
(BLAST)

001: MTVEEVSDGS VWSREDDIAF ERALANNTDE SEERWEKIAA DVPGKSVEQI KEHYELLVED VTRIESGCVP LPAYGSPEGS NGHAGDEGAS SKKGGNSHAG
101: ESNQAGKSKS DQERRKGIAW TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVGNADV STPQGPITGQ
201: NNSNNNNNNN NNNSSPAVAG GGNKSAKQAV SQAPPGPPMY GTPAIGQPAV GTPVNLPAPP HMAYGVHAAP VPGSVVPGAA MNIGQMPYTM PRTPTAHR

Arabidopsis Description

SRM1Transcription factor SRM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.