Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400010353 | Potato | nucleus | 96.61 | 96.61 |
| VIT_07s0031g00640.t01 | Wine grape | nucleus | 75.4 | 76.63 |
| KRH28473 | Soybean | nucleus | 70.41 | 72.08 |
| KRH77000 | Soybean | nucleus | 69.88 | 72.06 |
| GSMUA_Achr6P10170_001 | Banana | nucleus | 68.27 | 71.19 |
| AT4G36980.4 | Thale cress | nucleus | 68.98 | 69.6 |
| CDX75625 | Canola | nucleus | 67.02 | 68.74 |
| Bra011736.1-P | Field mustard | nucleus | 66.84 | 68.68 |
| GSMUA_Achr10P... | Banana | nucleus | 59.18 | 66.53 |
| Os03t0395900-02 | Rice | nucleus | 62.92 | 66.48 |
| HORVU4Hr1G039020.13 | Barley | nucleus | 60.43 | 64.2 |
| TraesCS4D01G149700.1 | Wheat | nucleus | 60.25 | 63.77 |
| TraesCS4A01G149000.1 | Wheat | nucleus | 59.89 | 63.28 |
| TraesCS4B01G164500.1 | Wheat | nucleus | 60.43 | 61.52 |
| Zm00001d029426_P024 | Maize | nucleus | 62.75 | 59.76 |
| CDX69275 | Canola | nucleus | 59.36 | 56.92 |
| OQU92461 | Sorghum | nucleus | 64.17 | 55.9 |
Protein Annotations
| EnsemblPlants:Solyc02g090850.2.1 | EnsemblPlantsGene:Solyc02g090850.2 | InterPro:SWAP_N_domain | ncoils:Coil | PANTHER:PTHR13161 | PANTHER:PTHR13161:SF4 |
| PFAM:PF09750 | SEG:seg | SMART:SM01141 | UniParc:UPI00027675FE | UniProt:K4BCN4 | MapMan:35.2 |
Description
No Description!
Coordinates
chr2:+:52320498..52328587
Molecular Weight (calculated)
65532.9 Da
IEP (calculated)
10.544
GRAVY (calculated)
-1.512
Length
561 amino acids
Sequence
(BLAST)
(BLAST)
001: MWHEARRSEK KVHDMMDAAR KRAQRRAIYL AKRRGDPQQS IQAIGSRCRI YRDDALYQAT EDQQGMIPWN GKQDILIDRF DGRALLDFIR DPSSRHRRAP
101: ERTEEEEELE EFVNFQRYRD LIKHRRRGFK DEEGMQHVNQ EMEAKTTALL GSDRPQLSQP PVSKGSYSQV GFSYDGEGKD EAHFSDGEEE DEDDDDDEEE
201: EDFNSDDSND EVMESIAKDY GVKRYGWLVY TDKKAKEEER RQREVIKGDP AIRKLSRKER RKASQLERER EREAARITGS RVLHHDPYRE SRRSPTYEAY
301: SRSRRSRSRS LSYSPPHSRR YERGGKSDDI YQGKERTPKI EYITEFGGAD DENKPKVEGY SPPPSPPPRT DPLSRPSTGR ILEALHVDPA SGVSIDKDKS
401: GQMLKTPTSA SSALSKLNKT TSSSSLSKQQ GEKKETPQER LKRIMSKQLN KQIKKDTAIE TAKKREQEKQ RLEKLAETSR VSRYRRRSRS RSYSRSPRRH
501: RRSRSPSRER SSRRYRSRSR SGSRSRTHSC SHSPSHSHSS SRSLSRSISR SRSPRRRRSR Y
101: ERTEEEEELE EFVNFQRYRD LIKHRRRGFK DEEGMQHVNQ EMEAKTTALL GSDRPQLSQP PVSKGSYSQV GFSYDGEGKD EAHFSDGEEE DEDDDDDEEE
201: EDFNSDDSND EVMESIAKDY GVKRYGWLVY TDKKAKEEER RQREVIKGDP AIRKLSRKER RKASQLERER EREAARITGS RVLHHDPYRE SRRSPTYEAY
301: SRSRRSRSRS LSYSPPHSRR YERGGKSDDI YQGKERTPKI EYITEFGGAD DENKPKVEGY SPPPSPPPRT DPLSRPSTGR ILEALHVDPA SGVSIDKDKS
401: GQMLKTPTSA SSALSKLNKT TSSSSLSKQQ GEKKETPQER LKRIMSKQLN KQIKKDTAIE TAKKREQEKQ RLEKLAETSR VSRYRRRSRS RSYSRSPRRH
501: RRSRSPSRER SSRRYRSRSR SGSRSRTHSC SHSPSHSHSS SRSLSRSISR SRSPRRRRSR Y
001: MWHEARRSEK KVHDMMDAAR KRAQRRAIYL AKRRGDPIQS IQAVGSRYRV FRDDGLYQAT EDQQGLIPWN GKQDVMIDRF DGRALLDFVR EAGSRSVRPH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRRHRR
501: SRSRSGSRSR RSRRHSSRSR SRSPSRSLSR SPKRSRRRSP SYSRSPRRRS SRSRH
101: KKTEEEEELE EFVNFERYRD LIKHRRRGFS DEEGLQHVHQ ELEAKLAAPF LGTRTQPAQP PANKGTYSQV GFSYAGNGKD NSLDADEDDV DDDEDDEDEE
201: EEFDSNDSDD EGMETIAKQF GIKRYGWLVY MDKKAKEEEK RQKELIKGDP SIKKLSRKER RKVSRIERDR ERETSRSVGR QIIHHDPYRE SRRSPTYEAY
301: PRSRRSRSRS RSYSPSYSRR NGRGDHSDEI SKPKIEYITE FGGGSGDMRS PKFEGYSPPR SPPSQSDLLS RPSPGRILEA LHVDPASDIS LEKDKVAKPA
401: KSTVSTSTAL AKLSKVAGTS SSKQSQAEKK ETPQERLKRI MNKQLTKQIK KDSATETAKK REQERQRLEK LAETSRLSRN RQRSRSRSIS RSPPPRRHRR
501: SRSRSGSRSR RSRRHSSRSR SRSPSRSLSR SPKRSRRRSP SYSRSPRRRS SRSRH
Arabidopsis Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Splicing factor, suppressor of white apricot (InterPro:IPR019147); /.../72 Blast hits to 5479 proteins in 321 species: Archae - 0; Bacteria - 89; Metazoa - 5155; Fungi - 712; Plants - 341; Viruses - 39; Other Eukaryotes - 1336 (source: NCBI BLink). [Source:TAIR;Acc:AT4G36980]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.