Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P26320_001 | Banana | cytosol, mitochondrion, nucleus | 63.55 | 42.43 |
| VIT_16s0013g00300.t01 | Wine grape | nucleus | 65.68 | 37.0 |
| AT4G25120.1 | Thale cress | nucleus | 66.67 | 35.4 |
| CDX92677 | Canola | nucleus, plastid | 61.9 | 34.43 |
| CDY11056 | Canola | nucleus, plastid | 61.41 | 34.19 |
| Os07t0492100-01 | Rice | plastid | 64.7 | 33.82 |
| EER97255 | Sorghum | plastid | 65.35 | 33.59 |
| Bra019188.1-P | Field mustard | nucleus | 61.25 | 32.72 |
| TraesCS2A01G226500.1 | Wheat | plastid | 64.04 | 32.66 |
| TraesCS2D01G237200.2 | Wheat | plastid | 63.88 | 32.39 |
| Zm00001d006443_P001 | Maize | nucleus | 64.7 | 32.22 |
| HORVU2Hr1G051300.27 | Barley | plastid | 63.71 | 31.93 |
| Solyc03g093860.1.1 | Tomato | nucleus | 9.2 | 12.81 |
| Solyc03g093840.1.1 | Tomato | endoplasmic reticulum | 3.94 | 10.13 |
| GSMUA_Achr4P26310_001 | Banana | cytosol | 1.15 | 7.87 |
| KRH33265 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 0.49 | 1.36 |
Protein Annotations
| Gene3D:1.10.486.10 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DNA_helicase_UvrD-like_C | InterPro:DNA_helicase_UvrD/REP | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004003 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 |
| InterPro:IPR014016 | InterPro:IPR014017 | UniProt:K4BIR1 | InterPro:P-loop_NTPase | PFAM:PF00580 | PFAM:PF13361 |
| PFscan:PS51198 | PFscan:PS51217 | PANTHER:PTHR11070 | PANTHER:PTHR11070:SF2 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc03g093850.1 |
| EnsemblPlants:Solyc03g093850.1.1 | UniParc:UPI000276765E | InterPro:UvrD-like_ATP-bd | InterPro:UvrD/AddA_N | SEG:seg | : |
Description
No Description!
Coordinates
chr3:-:55523872..55529530
Molecular Weight (calculated)
69432.3 Da
IEP (calculated)
8.844
GRAVY (calculated)
-0.402
Length
609 amino acids
Sequence
(BLAST)
(BLAST)
001: MRLGRTPEFL IYGHGQQRRA VIEAVRLLDD KKNGPRDELC QLNDKNSPQH FKERSKKWLK FVTQAKSAGR TPDDYYKIGN ETGAAVLQSY NDILKSCNAL
101: DYHDLISCSI KLLTDFPEVL EECQELWKAM VIDEFQDTSA VQYGLLHILA SHKRITIVGD EDQSIFGFSG ADASGFDSFR KDFPLHKEVR LSKNYRSTRC
201: IVEAASFLIQ NNSKRCQSKR VLTDNSVGSK ITIKECCNED AQCSFVVDKI LEIASDGTTE KSSFGDIAVL FRRQVSGKIF QAAFRNRKIP FNVHGVAFYR
301: KKVVKGIIAM LRTTLPGSDD GSFRRVFKAL LPSEKEEKMK VIEYIEKVST VRKSSFISAA RDIFSAKVSG TFKRSQLSQG RKVLLMIDMI SKLVKREESI
401: SAVITSVANM IPQKYLLEQR AVHDNDGGKL LNEDHDVRPV LQYLLDDVSD FLKTHKNPIE GESECKTEGQ GCANILKAFI DHISERESEN FRTRRHDNKD
501: SVTVTTIHQS KGLEWDTVFI VKANESEIPL LHEFNGITNE RSNSIEEERR LLYVAMTRAR KKLFILHVIM DSNWQVLQPS RFLREIPRHL QETQVRCDSV
601: LSMSVINVV
101: DYHDLISCSI KLLTDFPEVL EECQELWKAM VIDEFQDTSA VQYGLLHILA SHKRITIVGD EDQSIFGFSG ADASGFDSFR KDFPLHKEVR LSKNYRSTRC
201: IVEAASFLIQ NNSKRCQSKR VLTDNSVGSK ITIKECCNED AQCSFVVDKI LEIASDGTTE KSSFGDIAVL FRRQVSGKIF QAAFRNRKIP FNVHGVAFYR
301: KKVVKGIIAM LRTTLPGSDD GSFRRVFKAL LPSEKEEKMK VIEYIEKVST VRKSSFISAA RDIFSAKVSG TFKRSQLSQG RKVLLMIDMI SKLVKREESI
401: SAVITSVANM IPQKYLLEQR AVHDNDGGKL LNEDHDVRPV LQYLLDDVSD FLKTHKNPIE GESECKTEGQ GCANILKAFI DHISERESEN FRTRRHDNKD
501: SVTVTTIHQS KGLEWDTVFI VKANESEIPL LHEFNGITNE RSNSIEEERR LLYVAMTRAR KKLFILHVIM DSNWQVLQPS RFLREIPRHL QETQVRCDSV
601: LSMSVINVV
0001: MENLPPNRGM WNQEYSHGRI SQSFRSAKPL LDRKRPIENA PNSSNPLPQR MKESMDTESV SHNINFNSTP LMELSANTPY KRLKPEIESY ADGHPCGLRT
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL
Arabidopsis Description
SRS2ATP-dependent DNA helicase SRS2-like protein At4g25120 [Source:UniProtKB/Swiss-Prot;Acc:D1KF50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.