Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g093850.1.1 | Tomato | cytosol | 12.81 | 9.2 |
| TraesCS2B01G254500.1 | Wheat | plastid | 5.72 | 6.78 |
| Solyc03g093840.1.1 | Tomato | endoplasmic reticulum | 3.66 | 6.75 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DNA_helicase_UvrD/REP | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003824 | GO:GO:0004003 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0032508 | InterPro:IPR014016 | UniProt:K4BIR2 |
| InterPro:P-loop_NTPase | PFAM:PF00580 | PFscan:PS51198 | PANTHER:PTHR11070 | PANTHER:PTHR11070:SF2 | SUPFAM:SSF52540 |
| EnsemblPlantsGene:Solyc03g093860.1 | EnsemblPlants:Solyc03g093860.1.1 | UniParc:UPI000276765F | InterPro:UvrD-like_ATP-bd | InterPro:UvrD/AddA_N | SEG:seg |
Description
No Description!
Coordinates
chr3:-:55532697..55535405
Molecular Weight (calculated)
47917.2 Da
IEP (calculated)
6.135
GRAVY (calculated)
-0.521
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MNESVNNKEN VVGSGGGLTA EQKARISSKF RAAKALLARK RPLHDCSTTS LDKVGKAQRT TSLDRIDGDK RFPLTEIPTN TPSPIYEKGS NKTFNVFTSV
101: KGSQVRECGS SINARTTREI QFQTVETFKF SSNRSESVES NLSENGGSVQ VENMVGLNTY ITPVRQPGFS GLTESSFSST VLDDDFDEHI LDEIDALCEQ
201: NSKEKPGKRF NSIPIENHHI NNLDKEDNLN AVVSSDNSGQ ECILSRGNQE SEAERSKSSG PDNSNLVRSD EAFKLECILN STGNQECELE DPKSCKATDT
301: GSKLEATDIR NMPEDYIKYV ESLNDRQQEA ACSDISIPLI IVAGPGSGKT STMVGRVLML LHKGIGPSNI LAMTFTIAAA SEMRERIGRV AGKTAAKELT
401: ISTFHSFSLQ LCRMHAEKLV QSYAFCYFHG SRVIVLR
101: KGSQVRECGS SINARTTREI QFQTVETFKF SSNRSESVES NLSENGGSVQ VENMVGLNTY ITPVRQPGFS GLTESSFSST VLDDDFDEHI LDEIDALCEQ
201: NSKEKPGKRF NSIPIENHHI NNLDKEDNLN AVVSSDNSGQ ECILSRGNQE SEAERSKSSG PDNSNLVRSD EAFKLECILN STGNQECELE DPKSCKATDT
301: GSKLEATDIR NMPEDYIKYV ESLNDRQQEA ACSDISIPLI IVAGPGSGKT STMVGRVLML LHKGIGPSNI LAMTFTIAAA SEMRERIGRV AGKTAAKELT
401: ISTFHSFSLQ LCRMHAEKLV QSYAFCYFHG SRVIVLR
0001: MENLPPNRGM WNQEYSHGRI SQSFRSAKPL LDRKRPIENA PNSSNPLPQR MKESMDTESV SHNINFNSTP LMELSANTPY KRLKPEIESY ADGHPCGLRT
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL
0101: PPPRFDLDKE IINGFQTDIY ADVGSLSEAF VTPLKEPERV TLSNGCSTSS ILDDDFDDSI LEEIDLICEQ SARKAACQTP TTSIYQTPSK DNKSSDPKAS
0201: LDFRDVEKFE PDSNVKLKLD EETPTIAADP ALLNSMPDEC SKYMLSLNDR QRDAACSNIS TPLMVIAGPG SGKTSTMVGR VLVLLNEGLL PSNILAMTFT
0301: KAATSEMRER IGKSAGKKAA KDITISTFHS FSLQLCRMHA DKLQRTSEFS VYGHGQQRRA IIEAVRLYEE EKKNGSKTSV PCESGEGLNG AGAGAVCPEY
0401: AKDLSKKWQK FVTQGKASGK SPEQCRKMGN EIGAKILGNY NDILKACDAL DYHDLISCSV TLLSDFPEVF KECQDTWKAI IVDEFQDTST MQYKLLRMLG
0501: SHNHITIVGD DDQSIFGFNG ADSSGFDSFR RDFPNYKEVR LIKNYRSSRH IVEAASSIIK NNTKRCQSKS ISSENSQGSK ITVKECHNEE AQCAYVIDKI
0601: IEITNDGSTP CCSHGDIAIL YRRQVSGKVF QNAFRQRKIP FNVHGVAFYR KKVVQVILAM LKTTFSECDD ASYRRVFKAL LPFEKEEKKR IIEHIEKIST
0701: SRKCSFISAA SDIFNAKISG TFKRSQLTQG RKVLQTLDMV AKLVDREQSL SAVVTCVANM IPQKYLLEQR AVVDNDGGKL LNEDNDLRSV LQYLMDDVAE
0801: FISTHCTTTE EEDAIKEKKG CNQLHSFINY ISERETENFR SRRRDNENSV TLTTIHQSKG LEWDIVFIVK ANENEIPLLH ESNGNASESG TSLEEERRLL
0901: YVAMTRARKK LFFLYVTVDS NWQVLQPSRF LKEIPGHLLQ GDMSVNDCRK VHENLPNKTE QSVSSFGTDI KHEESKLTDN DVMNIPEDYA SEESIAAYAL
1001: NGNNFLKRFD VEVRSVVSHL FHNWAKKQAF QEPKRLIDKV RFVIGERLAI KKNKHKDVLR ALKSSLTSEE AFQYAEHVLR WEQLPADTRA HIVREKQEHF
1101: QKLRIENSMG TSEATSKQIA FLHSLGCTVV PTSRLHASRL IEQYKSL
Arabidopsis Description
SRS2ATP-dependent DNA helicase SRS2-like protein At4g25120 [Source:UniProtKB/Swiss-Prot;Acc:D1KF50]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.