Factsheet for Solyc04g076270.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
extracellular 1
cytosol 2
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024179	Potato	cytosol	86.56	86.33
KRH62217	Soybean	cytosol, nucleus	36.29	54.88
VIT_18s0001g07450.t01	Wine grape	cytosol	45.97	53.77
CDY66640	Canola	cytosol	38.71	47.06
KRH72458	Soybean	nucleus	41.94	44.83
Bra026639.1-P	Field mustard	cytosol	37.63	44.73
CDY09423	Canola	cytosol	37.63	44.73
AT2G01710.2	Thale cress	mitochondrion	38.17	40.0
KRH16845	Soybean	nucleus	38.98	39.84
KRG89389	Soybean	extracellular	14.78	36.67
Solyc07g007230.2.1	Tomato	nucleus	31.99	27.93
Solyc11g010540.1.1	Tomato	cytosol	23.66	23.53
Solyc11g006140.1.1	Tomato	nucleus	29.03	18.15
Solyc01g105780.2.1	Tomato	nucleus	33.33	17.29
Solyc11g006170.1.1	Tomato	nucleus	30.11	17.26

Protein Annotations

Gene3D:1.10.287.110	MapMan:12.5.1.16.2	InterPro:DnaJ_domain	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005829	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	UniProt:K4BU65
PFAM:PF00226	PRINTS:PR00625	PFscan:PS50076	PANTHER:PTHR45496	SMART:SM00271	SUPFAM:SSF46565
EnsemblPlantsGene:Solyc04g076270.1	EnsemblPlants:Solyc04g076270.1.1	UniParc:UPI0002765C6D	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:61196434..61197552

Molecular Weight (calculated)

40778.7 Da

IEP (calculated)

10.047

GRAVY (calculated)

-0.557

Length

372 amino acids

Sequence
(BLAST)

001: MEHHTTTSRA EAERLLGVAE KLLRDKEFAP CKDFALLAQE TEPLLEGPDQ ILAIAEVLLA SVKRINNHHD WYSILQIQGR TEDSELIKKQ YRRLALLLHP
101: DKNKYPSSDT AFGLVADAWA VLSDPSKKGL YDNELSLFGR VKLTPSARRG RPRGSYNKQK KGDAKLPVRR SSRASNSGSG QNQNPNPSPV SQKSYHSAPP
201: KATAPAPMSG AMRGQRVVNL WTACPYCYNL YEYPRVYEGC CLRCDKCKRA FTATEILSMP PMVPGKEAYY CIWGFFPMGF VNGNLEDLGT VKGAAAAAAT
301: TGAFPTWMPP MFSTQNAANN QQNATPIPAT VQVTNPAPAR PQAPPPPPAA AAAAPRPMST GPKKRGRPRK YN

Best Arabidopsis Sequence Match ( AT2G01710.1 )
(BLAST)

001: MGDNNPNRSE AERLLGIAEK LLESRDLNGS KEFAILAQET EPLLEGTDQI LAVVDVLLSS APENRIKNQP NWYKILQIED LTESSTDNDL IKKQYRRLAL
101: LLHPDKNRFP FADQAFRFVL DAWEVLSTPT KKSQFDGDLN LIFTKVNLNT QKSKKKTTTN EKMSTFWTAC PYCYSLHEYP RVYQEYCIRC QNCQRAFHAA
201: SIPQLPPLIP GKDEYYCCWG FFPMGFVGGK GGEAAIANGV DAAKFPNWMP PVFSSGGVAA PPSGNGVSFD GWSGGAAKRD NEAVRSNNGV GVNSDGTPKK
301: RGRGRPKKNP V

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:TAIR;Acc:AT2G01710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.