Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400091420 | Potato | nucleus | 40.48 | 36.8 |
| Solyc05g013420.1.1 | Tomato | nucleus | 20.48 | 23.24 |
| Solyc10g019150.1.1 | Tomato | nucleus | 17.14 | 21.95 |
| Solyc11g013560.1.1 | Tomato | nucleus | 18.1 | 18.45 |
| Solyc11g050730.1.1 | Tomato | nucleus | 17.62 | 18.41 |
| Solyc11g013620.1.1 | Tomato | plasma membrane | 21.43 | 17.79 |
| Solyc02g082380.1.1 | Tomato | nucleus | 16.19 | 15.32 |
| Solyc02g082390.1.1 | Tomato | nucleus | 17.14 | 12.81 |
| TraesCS7A01G135600.1 | Wheat | cytosol | 6.19 | 6.1 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | UniProt:K4BY64 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR12374 | PANTHER:PTHR12374:SF26 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc05g013430.1 |
| EnsemblPlants:Solyc05g013430.1.1 | TIGRFAMs:TIGR01557 | UniParc:UPI0002765EC0 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5:+:6500659..6501291
Molecular Weight (calculated)
23940.1 Da
IEP (calculated)
10.372
GRAVY (calculated)
-0.995
Length
210 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSSNRSFK LFGVKISNDE KKKGKRWSEE EHRAFLCGLE KLGTGNWSEI AKQFVPSRTR TQISSHAQKY FAWQKTRNDK AAKSTSNVEL SSSTSGKEER
101: PLSPMPISYN DSNNGDSVNL LSRKQEGKWT EEEHEAFLIG MEKVGRNWTR VSKEFVLSRT PTQITSHAQK YFEGLRNDRG PKRSVFDITL ERQSTTTCPE
201: SVTKAKQVLK
101: PLSPMPISYN DSNNGDSVNL LSRKQEGKWT EEEHEAFLIG MEKVGRNWTR VSKEFVLSRT PTQITSHAQK YFEGLRNDRG PKRSVFDITL ERQSTTTCPE
201: SVTKAKQVLK
001: MVKETVTVAK TCSHCGHNGH NARTCLNGVN KASVKLFGVN ISSDPIRPPE VTALRKSLSL GNLDALLAND ESNGSGDPIA AVDDTGYHSD GQIHSKKGKT
101: AHEKKKGKPW TEEEHRNFLI GLNKLGKGDW RGIAKSFVST RTPTQVASHA QKYFIRLNVN DKRKRRASLF DISLEDQKEK ERNSQDASTK TPPKQPITGI
201: QQPVVQGHTQ TEISNRFQNL SMEYMPIYQP IPPYYNFPPI MYHPNYPMYY ANPQVPVRFV HPSGIPVPRH IPIGLPLSQP SEASNMTNKD GLDLHIGLPP
301: QATGASDLTG HGVIHVK
101: AHEKKKGKPW TEEEHRNFLI GLNKLGKGDW RGIAKSFVST RTPTQVASHA QKYFIRLNVN DKRKRRASLF DISLEDQKEK ERNSQDASTK TPPKQPITGI
201: QQPVVQGHTQ TEISNRFQNL SMEYMPIYQP IPPYYNFPPI MYHPNYPMYY ANPQVPVRFV HPSGIPVPRH IPIGLPLSQP SEASNMTNKD GLDLHIGLPP
301: QATGASDLTG HGVIHVK
Arabidopsis Description
Probable transcription factor At5g61620 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKF9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.