Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- golgi 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400079004 | Potato | cytosol | 73.71 | 61.45 |
| Bra009389.1-P | Field mustard | cytosol | 27.93 | 40.61 |
| CDY69792 | Canola | cytosol | 27.93 | 40.61 |
| AT5G09540.1 | Thale cress | nucleus | 26.53 | 40.36 |
| CDY21586 | Canola | cytosol | 26.53 | 39.1 |
| CDY31322 | Canola | cytosol | 29.81 | 34.05 |
| Bra031921.1-P | Field mustard | cytosol | 29.34 | 33.88 |
| Solyc04g076270.1.1 | Tomato | nucleus | 27.93 | 31.99 |
| Solyc11g006140.1.1 | Tomato | nucleus | 42.49 | 30.42 |
| Solyc11g006170.1.1 | Tomato | nucleus | 46.24 | 30.35 |
| GSMUA_Achr3P06790_001 | Banana | cytosol | 22.54 | 29.54 |
| KRH42098 | Soybean | nucleus | 30.52 | 28.57 |
| VIT_03s0017g00300.t01 | Wine grape | nucleus | 32.39 | 28.4 |
| GSMUA_Achr10P... | Banana | cytosol | 27.7 | 28.03 |
| KRH49811 | Soybean | nucleus | 30.52 | 27.6 |
| Zm00001d047214_P001 | Maize | extracellular | 25.35 | 27.2 |
| Bra024289.1-P | Field mustard | nucleus | 28.87 | 26.8 |
| TraesCS4B01G160100.1 | Wheat | cytosol | 25.12 | 26.68 |
| Zm00001d029409_P001 | Maize | nucleus, peroxisome, plastid | 24.65 | 26.52 |
| AT5G64360.7 | Thale cress | nucleus | 28.87 | 26.51 |
| TraesCS4D01G156000.1 | Wheat | nucleus | 24.88 | 26.43 |
| HORVU4Hr1G039650.1 | Barley | nucleus | 24.65 | 26.38 |
| Solyc01g105780.2.1 | Tomato | nucleus | 44.37 | 26.36 |
| KRH10601 | Soybean | nucleus | 30.75 | 26.36 |
| CDX84519 | Canola | nucleus | 29.34 | 26.32 |
| TraesCS4A01G160900.1 | Wheat | cytosol | 24.65 | 26.25 |
| KRH21766 | Soybean | nucleus | 30.52 | 26.05 |
| Os03t0392400-01 | Rice | nucleus | 24.65 | 25.93 |
| EER92178 | Sorghum | nucleus | 24.41 | 25.81 |
| Os09t0463700-01 | Rice | nucleus | 21.83 | 25.0 |
| CDY58269 | Canola | nucleus | 29.11 | 24.7 |
| GSMUA_Achr1P21390_001 | Banana | cytosol | 23.24 | 24.57 |
| EES14021 | Sorghum | nucleus | 23.71 | 22.85 |
| Os07t0620200-01 | Rice | cytosol, mitochondrion, nucleus | 20.89 | 22.47 |
| Solyc11g010540.1.1 | Tomato | cytosol | 19.72 | 22.46 |
| HORVU2Hr1G030250.2 | Barley | cytosol | 20.19 | 22.11 |
| Zm00001d047043_P001 | Maize | nucleus | 22.3 | 21.94 |
| KXG35797 | Sorghum | nucleus | 19.48 | 21.61 |
| TraesCS2B01G191300.1 | Wheat | cytosol | 19.72 | 21.43 |
| TraesCS2A01G165100.1 | Wheat | cytosol | 19.48 | 21.23 |
| TraesCS2D01G172200.1 | Wheat | cytosol | 19.25 | 20.97 |
| KXG36712 | Sorghum | cytosol | 21.13 | 20.69 |
| Zm00001d022168_P001 | Maize | cytosol, mitochondrion, peroxisome | 20.89 | 20.14 |
| CDY46799 | Canola | nucleus | 18.08 | 19.64 |
| HORVU5Hr1G055620.1 | Barley | cytosol, nucleus, plastid | 13.38 | 19.26 |
| Zm00001d020762_P001 | Maize | nucleus | 19.72 | 19.09 |
| TraesCS5D01G252200.1 | Wheat | cytosol, nucleus, plastid | 21.13 | 17.08 |
| TraesCS5B01G242900.1 | Wheat | cytosol | 20.89 | 16.89 |
| TraesCS5A01G245400.1 | Wheat | cytosol, nucleus, plastid | 20.89 | 16.86 |
| CDY45473 | Canola | nucleus | 29.34 | 16.71 |
| Bra027007.1-P | Field mustard | nucleus | 28.87 | 16.49 |
| CDY45966 | Canola | nucleus | 28.64 | 16.4 |
| HORVU5Hr1G069570.1 | Barley | nucleus | 20.42 | 15.93 |
| AT1G62970.1 | Thale cress | nucleus | 27.93 | 14.93 |
Protein Annotations
| Gene3D:1.10.287.110 | MapMan:12.5.1.16.2 | InterPro:DnaJ_domain | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | InterPro:IPR001623 | InterPro:IPR036869 | InterPro:J_dom_sf | UniProt:K4CBJ4 |
| PFAM:PF00226 | PFscan:PS50076 | PANTHER:PTHR45496 | SMART:SM00271 | SUPFAM:SSF46565 | EnsemblPlantsGene:Solyc07g007230.2 |
| EnsemblPlants:Solyc07g007230.2.1 | UniParc:UPI000276ABCE | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr7:+:1979923..1981870
Molecular Weight (calculated)
47462.1 Da
IEP (calculated)
5.104
GRAVY (calculated)
-0.557
Length
426 amino acids
Sequence
(BLAST)
(BLAST)
001: MEHPFFINGP PTNRSEALRW LSIAEKLLTN RDLVGSKSFA TRARESDPSL AHPIDQILSI VDTLTAGDKR INNHHFDYYS ILQIPPNQTQ NFEFIADQYR
101: RFALLLNPQN NNFPFSDQAF GLVVDAFSVL SDPLRKSMYD KELGFFLNLY PVASAPTPVS FVQHGGFNQM QGSTADQLFV NMPSQDQGSH ATGVSYSRDP
201: QAGISMPVTF LNREQETMTM GSSGSEQEHQ QQQQQQQQQQ QPVTSLRQQT QQPEKESIRA DASAKKIPSF WTACPYCYVM HEYPLDYVDC TLKCQNCKRA
301: FQAVKVAAPP IIDGKEAYFC CWGFMPLGFS VEHFERSRNN VSSWSPFSPM FACPTSGANG GRNAKNNAVG GQSNVSTFGN LHNAGGSRSR SGRKISAPRI
401: YSDDDDDDDD DDDVLVDISE VLSGDA
101: RFALLLNPQN NNFPFSDQAF GLVVDAFSVL SDPLRKSMYD KELGFFLNLY PVASAPTPVS FVQHGGFNQM QGSTADQLFV NMPSQDQGSH ATGVSYSRDP
201: QAGISMPVTF LNREQETMTM GSSGSEQEHQ QQQQQQQQQQ QPVTSLRQQT QQPEKESIRA DASAKKIPSF WTACPYCYVM HEYPLDYVDC TLKCQNCKRA
301: FQAVKVAAPP IIDGKEAYFC CWGFMPLGFS VEHFERSRNN VSSWSPFSPM FACPTSGANG GRNAKNNAVG GQSNVSTFGN LHNAGGSRSR SGRKISAPRI
401: YSDDDDDDDD DDDVLVDISE VLSGDA
001: MVGGRGGVGG GGGNRVEADQ WLVTSEKLLA SSDLQGAKTF AIRACEADPT RAEAADYILA ICDILLAGET RLGDSNLPDW YAVLRLGRLA QNPEHVATQY
101: RRLALLLNPS VNRLPFADRA LKIVSDAWFV LSDPFKKSFY DRELQLSQLG QSGFHPQTQS HQNFQWEPSS STAVYPPPRS QSQAGTSADP MATSFWTACP
201: YCFVLFEYPK AYEECTLKCQ ECRRAFQAVT IPKPPVDKKD DEDVYFCSWA LFPLGFSGEF QAPSWSPISP LFACPLQKLD GEPKKRKEPG PPRIYYDDDD
301: IYVAISDGDD AGDDGDWQDV VQVNKKTNVG KGKETYVRSN KKHGVEEVQN VESISSASNH AVSIASNAAA VGSSTGVMSK PGSYITRKRM GTGAKNLGRL
401: DLNVEFSNEV EEPGVAGGGN AGNGIGSNRE VDNMEGIGFF EGLDEFLNSL PILSVVGDDK IKAT
101: RRLALLLNPS VNRLPFADRA LKIVSDAWFV LSDPFKKSFY DRELQLSQLG QSGFHPQTQS HQNFQWEPSS STAVYPPPRS QSQAGTSADP MATSFWTACP
201: YCFVLFEYPK AYEECTLKCQ ECRRAFQAVT IPKPPVDKKD DEDVYFCSWA LFPLGFSGEF QAPSWSPISP LFACPLQKLD GEPKKRKEPG PPRIYYDDDD
301: IYVAISDGDD AGDDGDWQDV VQVNKKTNVG KGKETYVRSN KKHGVEEVQN VESISSASNH AVSIASNAAA VGSSTGVMSK PGSYITRKRM GTGAKNLGRL
401: DLNVEFSNEV EEPGVAGGGN AGNGIGSNRE VDNMEGIGFF EGLDEFLNSL PILSVVGDDK IKAT
Arabidopsis Description
AT5G64360 protein [Source:UniProtKB/TrEMBL;Acc:Q9FMF3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.