Factsheet for Solyc07g064110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400049471	Potato	cytosol	47.29	93.27
KRG88500	Soybean	cytosol	6.47	59.14
VIT_19s0014g05230.t01	Wine grape	cytosol	38.71	56.05
KRH25865	Soybean	cytosol	9.41	54.42
KRH55647	Soybean	cytosol	29.41	53.88
KRH25868	Soybean	cytosol, nucleus, plastid	17.18	52.52
GSMUA_Achr1P26200_001	Banana	extracellular	20.82	49.86
KRH22239	Soybean	cytosol	25.88	46.81
KRH27097	Soybean	cytosol, mitochondrion	38.94	43.84
Bra029518.1-P	Field mustard	plastid	37.29	41.71
Os02t0132600-02	Rice	cytosol	26.0	40.93
AT4G21880.1	Thale cress	cytosol	40.35	40.69
AT4G04790.1	Thale cress	cytosol, mitochondrion	39.29	40.68
CDX94576	Canola	plastid	39.18	40.36
Bra013567.1-P	Field mustard	cytosol, mitochondrion	36.94	40.31
CDY16646	Canola	plastid	38.82	40.29
CDX79101	Canola	cytosol, mitochondrion	39.06	40.15
CDX82873	Canola	cytosol, mitochondrion	39.41	39.09
TraesCS6A01G096500.1	Wheat	cytosol, mitochondrion	35.88	35.38
TraesCS6D01G087600.1	Wheat	cytosol, plastid	35.88	35.38
TraesCS6B01G124900.1	Wheat	cytosol, plastid	36.24	35.36
GSMUA_Achr1P26220_001	Banana	plastid	17.65	35.21
HORVU6Hr1G017720.35	Barley	plastid	36.24	34.68
KRG88502	Soybean	vacuole	15.29	34.48
KRH55650	Soybean	mitochondrion, plastid	14.47	31.78
Zm00001d015156_P001	Maize	plastid	35.06	31.11
OQU84311	Sorghum	mitochondrion	35.53	30.85

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4CH94
PFAM:PF01535	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF623
InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc07g064110.2	EnsemblPlants:Solyc07g064110.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276C22E
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:66382520..66394623

Molecular Weight (calculated)

96405.9 Da

IEP (calculated)

5.686

GRAVY (calculated)

-0.211

Length

850 amino acids

Sequence
(BLAST)

001: MPGSKSKTLT SLFRAATKLS KQWKPVSPST SANGVALKQY GSPSSKPSND SSKSLSEIAA ESFNFKSAAD YGESSKLLSS EISSILCGDL DSYLSDPEES
101: SNASCLENVL DVPWLSNVEK CSISLRRKEI ARERKEKWTF KSSQVGRFHQ LVEQCACKLG TDTTIKVFGK LGRETGLKEY NALIRLCIEK ARESNDEEVS
201: LKQLSKAYQL LKSMKEQGFQ LKEESYGSIL MYFIDFGMVQ DFDFYCELIT DGNADSLVRL TYYEMLLWAK VENEDKIEEL LYHLSLYDGA DKSAFQENYL
301: LALCESDRVE DFVRVLRTID ITKVSSIDFV ANIFKFLGKL LLESFAKIFL QELVTTGIGA KDISKFICNY TISMPSAVED VILEFKNLHA ELELRPTFSQ
401: YEKLIRYCCE LFKVHAALDM VDQMFEAGLT LSLETFNSIL EACDKSREYN LVHRMYPMIL RHDIKPNSET FRIMINMTVR IKDFEGAYDM LKDLEKFNLM
501: PTTNMYNAIM GGYFREKDTR AALGVLKRME DANVKSDSQT FSYLISNCTN EDDISKFLDE MKDSGVQLTK HVYMALINGY AASGQFEKAK QVICDQGVSA
601: KGFNEIRSVL ISALASHGKI SDALDIYKEM EEAQCKLEPK AVTCLIENLQ AEGDLHRLLN LLEQLNGLDQ WVDASYRVIT YCIRKNHFRS IVDLLKRLVD
701: VYKSDEVAKE VLFDEVFYQI AEQDPINLQL GLDLLQAIKK DIGLLPSRQS LDFLLSACVN AKDLQACYLI WKEYRIAGLP YNILSYVRMY RALLALGDYK
801: SAANILNNIP RDDFHVCNVV KACQTAYGTS ASAKGKKKEN KTGKIVTYKM

Best Arabidopsis Sequence Match ( AT4G04790.1 )
(BLAST)

001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHVT TSDKSSLEKN LFLKIPSFTT KIPYDISLRT
101: KELSRERKER RVYKQNGLSR RFAKIFRDSA QKLGTEAMFG AFDRVAKEMS VTEYNAMIGV YLEHAEKSND LDYALGHIEK AFELLKSMRD RGFLIEERVY
201: GPLLGYLIGM DMVDEFHSFK DVIREASPGS VERLGYYEML LWIHLGDGEK IEELCSTIDG DNGESLSVLQ ENYLLALCKK DQKYHLERLL EIVDITKVRS
301: SDLLANIFEY LGRFSLDSVA SRFLWELRES DEGVKNVSDL ISIYSTCTPN PTVEDTILKF NKMHEELDVM PSSTSYEKLV KYSCDSNEVV TALDVVEKMG
401: EAGLMISADI LHSLLHAIDE VLEFDLVRRI HSIMCTKSVK PNTENFRSII RLCTRIKDFE GAYNMLGNLK NFNLEPNSSM FNCILAGYFR EKNVSSALMV
501: VKQMKEAGVK PDSITFGYLI NNCTQEDAIT KYYEEMKQAG VQATKRIYMS LIDAYAASGK FEKAKQVLVD PDVPAINQNE LKSVLISALA SRGKWADALH
601: IYEEMRKAEC HVDPKSIISL IEYSDSKGEL STLVQLADDL QDDTSWIDGF FRMILFAVRN KKSSDIVDLL KRNKVRLLKK GIPVEAHFDE VFWAIAETEP
701: SKVHLGMDLL RFMKDELGFV PSRKCLDFLL HACVNAKDLE HGLLVWKEYQ SAAFPCNVLS FLRMYQVLLA AGDSEGAKAL VSKIPKDDKD VQHIIEESQS
801: AFSQAPNKKK PKKKMIVLST K

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.