Factsheet for Solyc09g082050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g105780.2.1
Solyc07g007230.2.1
Solyc11g006140.1.1
Solyc11g006170.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	Solyc01g105780.2.1	AT5G09540.1	21798944
AT1G73100.1	Solyc07g007230.2.1	AT5G09540.1	21798944
AT1G73100.1	Solyc11g006140.1.1	AT5G09540.1	21798944
AT1G73100.1	Solyc11g006170.1.1	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077329	Potato	nucleus	96.45	93.0
Solyc10g077070.1.1	Tomato	nucleus	73.57	66.67
VIT_08s0040g00360.t01	Wine grape	nucleus	62.91	55.22
KRH66648	Soybean	nucleus	57.34	52.4
Bra009408.1-P	Field mustard	nucleus	38.95	49.22
KRG95012	Soybean	plastid	37.09	49.18
Bra005829.1-P	Field mustard	nucleus	48.38	48.53
Bra028776.1-P	Field mustard	nucleus	46.68	47.56
AT1G73100.1	Thale cress	nucleus	48.22	46.64
AT5G04940.2	Thale cress	nucleus	47.91	46.27
Bra009409.1-P	Field mustard	nucleus	47.45	46.17
Bra016018.1-P	Field mustard	nucleus	48.22	46.09
Os05t0490700-01	Rice	extracellular	44.2	42.56
GSMUA_Achr5P27620_001	Banana	nucleus	40.49	42.39
TraesCS1B01G378900.1	Wheat	nucleus	43.89	42.14
TraesCS1D01G366800.1	Wheat	nucleus	43.89	42.01
TraesCS1A01G362000.1	Wheat	nucleus	43.74	41.86
EES19725	Sorghum	nucleus	43.43	41.69
TraesCS1D01G307700.1	Wheat	nucleus	43.28	41.54
Zm00001d010646_P001	Maize	plastid	41.73	41.41
TraesCS1B01G319000.1	Wheat	nucleus	43.12	41.39
Os12t0128450-00	Rice	nucleus	39.26	41.37
Os11t0131600-00	Rice	nucleus	42.04	40.96
TraesCS1A01G308300.1	Wheat	nucleus	42.5	40.8
Zm00001d038541_P002	Maize	nucleus	43.43	40.61
TraesCS4B01G280000.1	Wheat	nucleus	43.89	39.17
TraesCS5A01G140500.1	Wheat	nucleus	40.49	38.42
TraesCS5D01G152000.1	Wheat	nucleus	40.65	38.23
Os01t0811300-01	Rice	nucleus, plasma membrane	43.28	38.04
EES01635	Sorghum	nucleus	42.97	37.47
Zm00001d041005_P001	Maize	nucleus	40.34	37.34
TraesCS5B01G138800.1	Wheat	nucleus	40.8	37.18
TraesCS3B01G367200.1	Wheat	nucleus	42.66	37.15
TraesCS3B01G366900.1	Wheat	nucleus	42.66	37.15
TraesCS3A01G336100.1	Wheat	nucleus	42.66	37.05
Os11t0602200-01	Rice	nucleus	46.52	37.02
TraesCS4D01G278500.1	Wheat	nucleus	46.21	36.51
TraesCS3D01G329100.1	Wheat	nucleus	41.73	36.34
EER96081	Sorghum	nucleus	46.21	36.02
TraesCS4A01G023500.1	Wheat	nucleus	46.37	35.97
OQU78645	Sorghum	nucleus	41.11	35.66
Zm00001d019195_P001	Maize	nucleus	46.68	35.28
Zm00001d043135_P003	Maize	nucleus	42.35	35.17
TraesCS3A01G385200.1	Wheat	plastid	39.41	35.12
EES10399	Sorghum	nucleus	44.05	34.8
TraesCS3B01G417400.1	Wheat	nucleus	44.67	34.69
TraesCS3D01G378200.1	Wheat	plastid	35.39	33.43
Solyc03g093720.1.1	Tomato	nucleus	14.53	31.33
Solyc12g096990.1.1	Tomato	nucleus	31.22	30.38
Solyc03g093740.1.1	Tomato	nucleus	13.76	28.99
Solyc09g090810.1.1	Tomato	nucleus	30.91	28.74
Solyc02g094520.2.1	Tomato	nucleus	28.28	27.03
Solyc03g093770.1.1	Tomato	golgi, plasma membrane	15.61	24.94
Solyc01g068370.2.1	Tomato	nucleus	12.36	23.46
Solyc03g093760.1.1	Tomato	nucleus	28.59	23.21
Solyc03g093710.1.1	Tomato	nucleus	28.28	21.84
Solyc03g093700.1.1	Tomato	nucleus	28.13	21.69
Solyc06g060960.1.1	Tomato	nucleus	32.61	20.0
Solyc08g077940.1.1	Tomato	nucleus	31.38	19.58
Solyc09g090630.1.1	Tomato	nucleus	17.31	14.11
Solyc06g083760.2.1	Tomato	nucleus	18.55	13.94
Solyc09g072890.1.1	Tomato	nucleus	16.23	12.73
Solyc02g089970.2.1	Tomato	nucleus	18.86	8.08
HORVU6Hr1G090170.1	Barley	cytosol	0.0	0.0
CDY21127	Canola	cytosol	0.0	0.0
CDX89821	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024
GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105
InterPro:IPR003616	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987	UniProt:K4CVI3	PFAM:PF00856
PFAM:PF02182	PFAM:PF05033	PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015
PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF479	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom
InterPro:SET_dom	SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG
SUPFAM:SSF82199	SUPFAM:SSF88697	EnsemblPlantsGene:Solyc09g082050.2	EnsemblPlants:Solyc09g082050.2.1	UniParc:UPI000276BF5B	SEG:seg

Description

No Description!

Coordinates

chr9:-:67890870..67893481

Molecular Weight (calculated)

71721.9 Da

IEP (calculated)

8.700

GRAVY (calculated)

-0.453

Length

647 amino acids

Sequence
(BLAST)

001: MEQGFGSDPS GSTIDKTRVL DVKPLRCLSP VFPSASEMSS ITTPQPSPFL CITPTGPFPS GVTPIFPFLS PDEPVRMGES SQQTPNQVPN QGTFGFGQPI
101: SPIPVNSFGN QTANGSSGHV NNVGDSGSGK KKGGPKKPRK VPPENAKKAD GDKEVVRRIL LVFDLFRRRM TQIDEPRYGA GSGRRPDLKA SKMMMLKGMR
201: TNQTKRIGNV PGIEVGDIFF FRMELCVVGL HAPTMSGIDY MSLKLTKDEE PLAVSIVSAG GYDDDGGDGD LLIYTGQGGV QRKDGQMFDQ KLEKGNLALE
301: KSVHRANDVR VIRGVKDVAN PTGKIYIFDG LYKIQGSWEE KIKTGCNVFK YKLLRVPGQP EAFKVWKSIQ QWRDGVVSRV GVILPDLTSG AESQAVCLVN
401: DVDDEKGPAY FTYIPSLKYS KPFLTPRPSL GCQCIGGCQP DDTNCPCIQR NQGLLPYNSL GVLMTYKNLI HECGSACSCP ANCRNRMSQG GPKVRMEVFK
501: TKNKGWGLRS WDPIRGGCFI CEYAGEVRDI GYDRDDNYIF DATRIYEPLE AVHDYNDESR KVPFPLVISS KNGGNIARFM NHSCSPNVYW QLVVRESNNE
601: AYYHIAFFAI RHIPPLQELT FDYGMDKADH RRKKCLCGSF KCRGYFY

Best Arabidopsis Sequence Match ( AT1G73100.1 )
(BLAST)

001: MQGVPGFNTV PNPNHYDKSI VLDIKPLRSL KPVFPNGNQG PPFVGCPPFG PSSSEYSSFF PFGAQQPTHD TPDLNQTQNT PIPSFVPPLR SYRTPTKTNG
101: PSSSSGTKRG VGRPKGTTSV KKKEKKTVAN EPNLDVQVVK KFSSDFDSGI SAAEREDGNA YLVSSVLMRF DAVRRRLSQV EFTKSATSKA AGTLMSNGVR
201: TNMKKRVGTV PGIEVGDIFF SRIEMCLVGL HMQTMAGIDY IISKAGSDEE SLATSIVSSG RYEGEAQDPE SLIYSGQGGN ADKNRQASDQ KLERGNLALE
301: NSLRKGNGVR VVRGEEDAAS KTGKIYIYDG LYSISESWVE KGKSGCNTFK YKLVRQPGQP PAFGFWKSVQ KWKEGLTTRP GLILPDLTSG AESKPVSLVN
401: DVDEDKGPAY FTYTSSLKYS ETFKLTQPVI GCSCSGSCSP GNHNCSCIRK NDGDLPYLNG VILVSRRPVI YECGPTCPCH ASCKNRVIQT GLKSRLEVFK
501: TRNRGWGLRS WDSLRAGSFI CEYAGEVKDN GNLRGNQEED AYVFDTSRVF NSFKWNYEPE LVDEDPSTEV PEEFNLPSPL LISAKKFGNV ARFMNHSCSP
601: NVFWQPVIRE GNGESVIHIA FFAMRHIPPM AELTYDYGIS PTSEARDESL LHGQRTCLCG SEQCRGSFG

Arabidopsis Description

SUVH3Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.