Factsheet for Solyc10g077070.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plasma membrane 1
extracellular 1
endoplasmic reticulum 1
golgi 1
vacuole 1
plastid 1
nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 20363867
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g105780.2.1
Solyc07g007230.2.1
Solyc11g006140.1.1
Solyc11g006170.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	Solyc01g105780.2.1	AT5G09540.1	21798944
AT1G73100.1	Solyc07g007230.2.1	AT5G09540.1	21798944
AT1G73100.1	Solyc11g006140.1.1	AT5G09540.1	21798944
AT1G73100.1	Solyc11g006170.1.1	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018512	Potato	nucleus	98.04	97.49
Solyc09g082050.2.1	Tomato	nucleus	66.67	73.57
VIT_08s0040g00360.t01	Wine grape	nucleus	60.78	58.89
KRH66648	Soybean	nucleus	55.74	56.21
KRG95012	Soybean	plastid	36.27	53.07
Bra009408.1-P	Field mustard	nucleus	36.97	51.56
Bra028776.1-P	Field mustard	nucleus	45.38	51.02
Bra005829.1-P	Field mustard	nucleus	45.8	50.7
Bra009409.1-P	Field mustard	nucleus	45.8	49.17
AT1G73100.1	Thale cress	nucleus	45.94	49.03
AT5G04940.2	Thale cress	nucleus	45.94	48.96
Bra016018.1-P	Field mustard	nucleus	46.08	48.6
GSMUA_Achr5P27620_001	Banana	nucleus	37.25	43.04
Os05t0490700-01	Rice	extracellular	40.2	42.71
Os12t0128450-00	Rice	nucleus	36.55	42.51
Zm00001d010646_P001	Maize	plastid	38.8	42.48
Os11t0131600-00	Rice	nucleus	39.5	42.47
EES19725	Sorghum	nucleus	40.06	42.43
TraesCS1B01G378900.1	Wheat	nucleus	39.92	42.28
TraesCS1D01G366800.1	Wheat	nucleus	39.92	42.16
TraesCS1A01G362000.1	Wheat	nucleus	39.64	41.86
TraesCS1B01G319000.1	Wheat	nucleus	38.66	40.95
TraesCS1D01G307700.1	Wheat	nucleus	38.66	40.95
Zm00001d038541_P002	Maize	nucleus	39.64	40.9
TraesCS1A01G308300.1	Wheat	nucleus	38.38	40.65
TraesCS5A01G140500.1	Wheat	nucleus	37.82	39.59
TraesCS5D01G152000.1	Wheat	nucleus	37.53	38.95
TraesCS4B01G280000.1	Wheat	nucleus	39.5	38.9
Zm00001d041005_P001	Maize	nucleus	37.96	38.77
TraesCS5B01G138800.1	Wheat	nucleus	38.1	38.31
EES01635	Sorghum	nucleus	39.36	37.87
Os01t0811300-01	Rice	nucleus, plasma membrane	38.94	37.77
TraesCS3B01G367200.1	Wheat	nucleus	38.94	37.42
TraesCS3B01G366900.1	Wheat	nucleus	38.94	37.42
TraesCS3A01G336100.1	Wheat	nucleus	38.94	37.32
TraesCS3D01G329100.1	Wheat	nucleus	38.52	37.01
OQU78645	Sorghum	nucleus	38.52	36.86
TraesCS4D01G278500.1	Wheat	nucleus	41.04	35.78
Zm00001d043135_P003	Maize	nucleus	38.94	35.69
EER96081	Sorghum	nucleus	41.46	35.66
Os11t0602200-01	Rice	nucleus	40.48	35.55
EES10399	Sorghum	nucleus	40.76	35.53
TraesCS4A01G023500.1	Wheat	nucleus	41.18	35.25
Zm00001d019195_P001	Maize	nucleus	41.6	34.7
TraesCS3A01G385200.1	Wheat	plastid	34.87	34.3
TraesCS3B01G417400.1	Wheat	nucleus	39.64	33.97
TraesCS3D01G378200.1	Wheat	plastid	31.51	32.85
Solyc03g093720.1.1	Tomato	nucleus	13.73	32.67
Solyc03g093740.1.1	Tomato	nucleus	13.59	31.6
Solyc12g096990.1.1	Tomato	nucleus	29.13	31.28
Solyc09g090810.1.1	Tomato	nucleus	28.99	29.74
Solyc02g094520.2.1	Tomato	nucleus	25.35	26.74
Solyc03g093770.1.1	Tomato	golgi, plasma membrane	14.85	26.17
Solyc01g068370.2.1	Tomato	nucleus	11.48	24.05
Solyc03g093760.1.1	Tomato	nucleus	26.75	23.96
Solyc03g093710.1.1	Tomato	nucleus	26.89	22.91
Solyc03g093700.1.1	Tomato	nucleus	26.75	22.77
Solyc06g060960.1.1	Tomato	nucleus	29.55	20.0
Solyc08g077940.1.1	Tomato	nucleus	28.29	19.48
Solyc09g072890.1.1	Tomato	nucleus	16.11	13.94
Solyc06g083760.2.1	Tomato	nucleus	16.25	13.47
Solyc09g090630.1.1	Tomato	nucleus	14.15	12.72
Solyc02g089970.2.1	Tomato	nucleus	18.35	8.68
HORVU6Hr1G090170.1	Barley	cytosol	0.0	0.0
CDY21127	Canola	cytosol	0.0	0.0
CDX89821	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005694	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008168
GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024
GO:GO:0019538	GO:GO:0032259	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105
InterPro:IPR003616	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987	UniProt:K4D249	PFAM:PF00856
PFAM:PF02182	PFAM:PF05033	PFscan:PS50280	PFscan:PS50867	PFscan:PS50868	PFscan:PS51015
PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF479	InterPro:PUA-like_sf	InterPro:Post-SET_dom	InterPro:Pre-SET_dom
InterPro:SET_dom	SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG
SUPFAM:SSF82199	SUPFAM:SSF88697	EnsemblPlantsGene:Solyc10g077070.1	EnsemblPlants:Solyc10g077070.1.1	UniParc:UPI000276A0A4	SEG:seg

Description

No Description!

Coordinates

chr10:-:59976088..59978232

Molecular Weight (calculated)

78456.1 Da

IEP (calculated)

7.910

GRAVY (calculated)

-0.507

Length

714 amino acids

Sequence
(BLAST)

001: MEQGFGSDSV PPAGPIDKSK VLDVKPLRCL VPVFPSPNGM ASGTTPQPSP FVCVPPSGPF PPGVSPFYPF LSPNESGRSA ENQDGLGFGT PISPVPLNSF
101: RTPAANGDTG PRRPGRPRAS NGLAAEDDDS QNHSDQFGSG YSGHANDVED TSTGKKRGRP RKTRLGQPSS GNPATPPIEV DVDPLLNQLL ASFKLVEIDQ
201: VKKADGDKEL SGRILLVYDL FRRRMTQIEE RRGETPGSAR RPDLKGANLL MTRGARTNQT KRIGNVPGVE VGDIFFFRME LCLVGLHAPS MAGIDYMSVR
301: LTGDEEPIAV SIVSSGGYDD EGDDGEVLIY TGQGGVQRRD GQMFDQKLER GNLALEKSMH RGNEVRVIRG VVDVQNGGRG KIYMYDGLYR VQESWAEKSK
401: LGNCSIFRYK LIRVPGQPEA YTLWKSVQQW REGTATRVGV ILPDLTSGAE SQPVCLVNDV DDEKGPAYFT YIPSLKYSKP FMKSNPSVGC QCLGGCQPGG
501: TSCPCIQKNG GYLPFNPLGV LMSYKTLVYE CGSACSCPPN CRNRITQAGP KARVEVFKTK NRGWGLRSWD PIRGGGFVCE YAGEVIEESR VGEFGNDGDD
601: DYIFDATRMY EPLEAVRDYN DESKKVPYPL VISAKKGGNV ARFMNHSCSP NVYWQLVVRE INNETFYHVA FFAIRHIPPM QELTFDYGMV PPDKADRRRK
701: KCLCGSLNCR GYFY

Best Arabidopsis Sequence Match ( AT1G73100.1 )
(BLAST)

001: MQGVPGFNTV PNPNHYDKSI VLDIKPLRSL KPVFPNGNQG PPFVGCPPFG PSSSEYSSFF PFGAQQPTHD TPDLNQTQNT PIPSFVPPLR SYRTPTKTNG
101: PSSSSGTKRG VGRPKGTTSV KKKEKKTVAN EPNLDVQVVK KFSSDFDSGI SAAEREDGNA YLVSSVLMRF DAVRRRLSQV EFTKSATSKA AGTLMSNGVR
201: TNMKKRVGTV PGIEVGDIFF SRIEMCLVGL HMQTMAGIDY IISKAGSDEE SLATSIVSSG RYEGEAQDPE SLIYSGQGGN ADKNRQASDQ KLERGNLALE
301: NSLRKGNGVR VVRGEEDAAS KTGKIYIYDG LYSISESWVE KGKSGCNTFK YKLVRQPGQP PAFGFWKSVQ KWKEGLTTRP GLILPDLTSG AESKPVSLVN
401: DVDEDKGPAY FTYTSSLKYS ETFKLTQPVI GCSCSGSCSP GNHNCSCIRK NDGDLPYLNG VILVSRRPVI YECGPTCPCH ASCKNRVIQT GLKSRLEVFK
501: TRNRGWGLRS WDSLRAGSFI CEYAGEVKDN GNLRGNQEED AYVFDTSRVF NSFKWNYEPE LVDEDPSTEV PEEFNLPSPL LISAKKFGNV ARFMNHSCSP
601: NVFWQPVIRE GNGESVIHIA FFAMRHIPPM AELTYDYGIS PTSEARDESL LHGQRTCLCG SEQCRGSFG

Arabidopsis Description

SUVH3Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.