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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • extracellular 1
  • golgi 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, extracellular, golgi, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:extracellular
MultiLoc:nucleus
Plant-mPloc:golgi, nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc11g006170.1.1 Tomato nucleus 55.46 50.85
Solyc07g007230.2.1 Tomato nucleus 30.42 42.49
AT5G09540.1 Thale cress nucleus 17.48 37.14
Bra031921.1-P Field mustard cytosol 22.18 35.77
CDY31322 Canola cytosol 22.35 35.66
Bra009389.1-P Field mustard cytosol 17.14 34.81
CDY69792 Canola cytosol 17.14 34.81
KRH42098 Soybean nucleus 25.71 33.63
CDY21586 Canola cytosol 16.3 33.56
KRH49811 Soybean nucleus 25.71 32.48
VIT_03s0017g00300.t01 Wine grape nucleus 25.38 31.07
Solyc01g105780.2.1 Tomato nucleus 37.31 30.96
AT5G64360.7 Thale cress nucleus 23.03 29.53
KRH21766 Soybean nucleus 24.37 29.06
Solyc04g076270.1.1 Tomato nucleus 18.15 29.03
GSMUA_Achr3P06790_001 Banana cytosol 15.8 28.92
KRH10601 Soybean nucleus 24.03 28.77
CDX84519 Canola nucleus 22.86 28.63
Bra024289.1-P Field mustard nucleus 22.02 28.54
CDY58269 Canola nucleus 22.35 26.49
GSMUA_Achr10P... Banana cytosol 18.49 26.13
GSMUA_Achr1P21390_001 Banana cytosol 16.97 25.06
EER92178 Sorghum nucleus 16.64 24.57
Os09t0463700-01 Rice nucleus 15.29 24.46
HORVU4Hr1G039650.1 Barley nucleus 16.3 24.37
Solyc11g010540.1.1 Tomato cytosol 15.29 24.33
TraesCS4D01G156000.1 Wheat nucleus 16.3 24.19
Zm00001d047214_P001 Maize extracellular 15.97 23.93
CDY46799 Canola nucleus 15.63 23.72
TraesCS4A01G160900.1 Wheat cytosol 15.8 23.5
Os03t0392400-01 Rice nucleus 15.97 23.46
KXG35797 Sorghum nucleus 15.13 23.44
TraesCS4B01G160100.1 Wheat cytosol 15.63 23.19
EES14021 Sorghum nucleus 16.97 22.85
Zm00001d029409_P001 Maize nucleus, peroxisome, plastid 15.13 22.73
Zm00001d020762_P001 Maize nucleus 16.47 22.27
Os07t0620200-01 Rice cytosol, mitochondrion, nucleus 14.62 21.97
Zm00001d047043_P001 Maize nucleus 15.97 21.94
TraesCS2D01G172200.1 Wheat cytosol 13.28 20.2
TraesCS2B01G191300.1 Wheat cytosol 13.28 20.15
TraesCS2A01G165100.1 Wheat cytosol 13.11 19.95
HORVU5Hr1G055620.1 Barley cytosol, nucleus, plastid 9.92 19.93
HORVU2Hr1G030250.2 Barley cytosol 12.94 19.79
KXG36712 Sorghum cytosol 14.29 19.54
Zm00001d022168_P001 Maize cytosol, mitochondrion, peroxisome 13.78 18.55
TraesCS5B01G242900.1 Wheat cytosol 14.62 16.51
HORVU5Hr1G069570.1 Barley nucleus 15.13 16.48
TraesCS5D01G252200.1 Wheat cytosol, nucleus, plastid 14.45 16.32
TraesCS5A01G245400.1 Wheat cytosol, nucleus, plastid 14.29 16.1
CDY45473 Canola nucleus 18.32 14.57
CDY45966 Canola nucleus 17.82 14.25
Bra027007.1-P Field mustard nucleus 17.82 14.21
AT1G62970.1 Thale cress nucleus 18.66 13.93
Protein Annotations
Gene3D:1.10.287.110MapMan:12.5.1.16.2InterPro:DnaJ_domainGO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005829InterPro:IPR001623InterPro:IPR036869InterPro:J_dom_sfUniProt:K4D4M7
PFAM:PF00226PFscan:PS50076PANTHER:PTHR45496SMART:SM00271SUPFAM:SSF46565EnsemblPlantsGene:Solyc11g006140.1
EnsemblPlants:Solyc11g006140.1.1UniParc:UPI0002769C31SEG:seg:::
Description
No Description!
Coordinates
chr11:-:905560..907542
Molecular Weight (calculated)
65919.2 Da
IEP (calculated)
6.161
GRAVY (calculated)
-0.521
Length
595 amino acids
Sequence
(BLAST)
001: MEHPFFINSD PPINRSKAFR FLSIAENLLS NRDLVGSKSF ATRALESDPT YVHVTNQILS IVDTLSAGDR LINNHHFDYY SILQIPSNQT QNADFIAEQY
101: RRLKFLLNPQ TNTFPFTGQA FHLVIDAFTV LSDPLRKSMY DKELGLLRNP YQVVASTSIP VHQSVYPSMP SPNADLMFVN LFTQDQGPHA AGVSFSRNPQ
201: AGMSMPVTFL THEQETMTSM ESLPIEQQLQ QPETFLKQKT QPVTPISFSN TDEQPTSSFS LNQPQLLTSK RSFNRENPPF GTGVSSTQGR EAVVCAEQHG
301: NQQPLERNEN VVGNNANKSA STGDNVKEKE GNVDASGKSI PSFWTACPYC LFMYEYSVEY THCTLRCPNC KKGFQAVPIA SPPPIIDGKI NNFCNWGFMP
401: FGLSLEDFNR NIGNASSWSP FSPMFTCPLF EWHGGSNVNN QSVGGQSNVN NLGSSHNAGG SKSGGGRKHF SPIICIDDDA LVEASQSDEE SNVDWNRNKE
501: RKKAKNGKRK CARKKTPSKN AKKHNEVEEP IIQMGQENEA GEGEGDTVDV VGFFKGLDEF RSSLPILKAE DGDKVEAACY NSLVSQQFTV VAICL
Best Arabidopsis Sequence Match ( AT5G09540.1 )
(BLAST)
001: MVSDGGGENN RAEADQLLAT SEKLLASSDF HGAKTFAIRA CEADPSRTDA ADYILAIADT LLAGETTIGD SKVPDWYAVL RISRLTQSPE HVATQYRRLT
101: LLLKLNINRL PFADQALKLV SDAWYVLSDP PRKSIYDREL QLSQTGQSEK FQDSPLQSQA ETLENPTATS FWTACPYCFS LFEYPKGYEE CTLRCQQCRK
201: AFEAVKTQTP PVESNGEGVY FGSWAMFPVG LTSHPNTSNW SPISHLSVCT GQSSSDQQSN LKATPRNDDV DIYIAISDDD
Arabidopsis Description
At5g09540 [Source:UniProtKB/TrEMBL;Acc:Q9LXB9]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.