Factsheet for Solyc11g006170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073845	Potato	cytosol	95.53	95.09
Solyc11g006140.1.1	Tomato	nucleus	50.85	55.46
Solyc07g007230.2.1	Tomato	nucleus	30.35	46.24
CDY31322	Canola	cytosol	24.19	42.09
Bra031921.1-P	Field mustard	cytosol	23.73	41.73
Solyc01g105780.2.1	Tomato	nucleus	45.92	41.56
KRH42098	Soybean	nucleus	28.04	40.0
VIT_03s0017g00300.t01	Wine grape	nucleus	29.43	39.3
AT5G09540.1	Thale cress	nucleus	16.49	38.21
KRH49811	Soybean	nucleus	27.43	37.79
AT5G64360.7	Thale cress	nucleus	26.35	36.85
CDY69792	Canola	cytosol	16.49	36.52
Bra009389.1-P	Field mustard	cytosol	16.49	36.52
Bra024289.1-P	Field mustard	nucleus	24.96	35.29
CDX84519	Canola	nucleus	25.73	35.16
KRH10601	Soybean	nucleus	26.81	35.01
CDY21586	Canola	cytosol	15.41	34.6
KRH21766	Soybean	nucleus	26.35	34.27
CDY58269	Canola	nucleus	25.42	32.87
Solyc04g076270.1.1	Tomato	nucleus	17.26	30.11
CDY46799	Canola	nucleus	16.95	28.06
Zm00001d047214_P001	Maize	extracellular	17.1	27.96
HORVU4Hr1G039650.1	Barley	nucleus	17.1	27.89
GSMUA_Achr3P06790_001	Banana	cytosol	13.87	27.69
TraesCS4D01G156000.1	Wheat	nucleus	17.1	27.68
EER92178	Sorghum	nucleus	17.1	27.54
TraesCS4B01G160100.1	Wheat	cytosol	16.8	27.18
Os03t0392400-01	Rice	nucleus	16.95	27.16
GSMUA_Achr10P...	Banana	cytosol	17.57	27.08
TraesCS4A01G160900.1	Wheat	cytosol	16.64	27.0
GSMUA_Achr1P21390_001	Banana	cytosol	16.64	26.8
Zm00001d029409_P001	Maize	nucleus, peroxisome, plastid	16.18	26.52
Os07t0620200-01	Rice	cytosol, mitochondrion, nucleus	15.41	25.25
Os09t0463700-01	Rice	nucleus	14.33	25.0
KXG35797	Sorghum	nucleus	14.64	24.74
Solyc11g010540.1.1	Tomato	cytosol	14.02	24.33
TraesCS2A01G165100.1	Wheat	cytosol	14.33	23.79
TraesCS2D01G172200.1	Wheat	cytosol	14.33	23.79
TraesCS2B01G191300.1	Wheat	cytosol	14.33	23.72
HORVU2Hr1G030250.2	Barley	cytosol	14.02	23.39
EES14021	Sorghum	nucleus	15.87	23.3
Zm00001d020762_P001	Maize	nucleus	15.41	22.73
Zm00001d047043_P001	Maize	nucleus	14.95	22.4
KXG36712	Sorghum	cytosol	14.95	22.3
Zm00001d022168_P001	Maize	cytosol, mitochondrion, peroxisome	15.1	22.17
HORVU5Hr1G055620.1	Barley	cytosol, nucleus, plastid	10.02	21.96
TraesCS5D01G252200.1	Wheat	cytosol, nucleus, plastid	15.41	18.98
TraesCS5A01G245400.1	Wheat	cytosol, nucleus, plastid	15.41	18.94
TraesCS5B01G242900.1	Wheat	cytosol	15.25	18.79
HORVU5Hr1G069570.1	Barley	nucleus	15.25	18.13
Bra027007.1-P	Field mustard	nucleus	18.64	16.22
CDY45966	Canola	nucleus	18.49	16.13
CDY45473	Canola	nucleus	18.18	15.78
AT1G62970.1	Thale cress	nucleus	17.87	14.55

Protein Annotations

Gene3D:1.10.287.110	MapMan:12.5.1.16.2	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
UniProt:K4D4N0	PFAM:PF00226	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR45496	SMART:SM00271
SUPFAM:SSF46565	EnsemblPlantsGene:Solyc11g006170.1	EnsemblPlants:Solyc11g006170.1.1	UniParc:UPI0002769C34	SEG:seg	:

Description

No Description!

Coordinates

chr11:-:918328..920277

Molecular Weight (calculated)

71546.9 Da

IEP (calculated)

4.892

GRAVY (calculated)

-0.608

Length

649 amino acids

Sequence
(BLAST)

001: MEHPFFINNG PPTNRSEALR FLSIAEKLLT NRDLVGSKSF ATRARDADPT FAPATDQILG IVDTLNAGDK RINNHHFDYY SILQIPHNQT QNVDFIAEQY
101: RRFALLLNPQ NNSFPFSDQA FRLVVDAFSV LSNPMRKSMY DKELGFFLNL YPVAASTAPT SNFVHQNVYQ SMPSSNADQM FVNLPSQDAA GVSFSRDPQA
201: GISMPPTFLT REQETVTSMG SSDIGQQQQQ PQQPVTFLRQ QTQPVTSISF SNTDEKPATF LSLNQPQPVT SVRSLTRENP PVGVRLSSTQ GREPVVTVEQ
301: HGNQQLPERN ENVVGNNANK SASTSDDVKE QEGNVDGSGK RIPSFWTACP FCLIMYEYSL DYANCNLRCQ NCKKGFQAVT IASPPPIIDG KEINFCCWGF
401: MPFGLSLEDF NRNTDNTSSW SPFSPMFTSP RFGGDGGSNV NSHATGGQIN VNNLGSSLNA GGSISGGGRK HFTPTIYVED DDDDVFVEVS ESGQESDVDW
501: NRSKERKEAK NVKKKNARIG TPRKNAKKQH TDKAKTVEGN NDDNLQDGLA TQGGVEISHA VTVESSNRGV TSKTRRQRGR VAKHFGNLDL NVEFSNEVEE
601: PIIQMSRENE AGEGEDDTVE VIGFFEGLDE FLSSLPILNA VDGDKVEAA

Best Arabidopsis Sequence Match ( AT5G64360.4 )
(BLAST)

001: MVGGRGGVGG GGGNRVEADQ WLVTSEKLLA SSDLQGAKTF AIRACEADPT RAEAADYILA ICDILLAGET RLGDSNLPDW YAVLRLGRLA QNPEHVATQY
101: RRLALLLNPS VNRLPFADRA LKIVSDAWFV LSDPFKKSFY DRELQLSQLG QSGFHPQTQS HQNFQWEPSS STAVYPPPRS QSQAGTSADP MATSFWTACP
201: YCFVLFEYPK AYEECTLKCQ ECRRAFQAVT IPKPPVDKKD DEDVYFCSWA LFPLGFSGEF QAPSWSPISP LFACPLQKLD GEPKKRKEPG PPRIYYDDDD
301: IYVAISDGDD AGDDGDWQDV VQVNKKTNVG KGKETYVRSN KKHGVEEVQN VESISSASNH AVSIASNAAA VGSSTGVMSK PGSYITRKRM GTGAKNLGRL
401: DLNVEFSNEV EEPGVAGGGN AGNGIGSNRE VDNMEGIGFF EGLDEFLNSL PILSVVGDDK IKAT

Arabidopsis Description

AT5G64360 protein [Source:UniProtKB/TrEMBL;Acc:Q9FMF3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.