Factsheet for Solyc11g013620.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plasma membrane 6
extracellular 3
endoplasmic reticulum 3
golgi 3
vacuole 3
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g013560.1.1	Tomato	nucleus	57.31	70.39
PGSC0003DMT400071438	Potato	nucleus	44.27	51.85
Solyc11g050730.1.1	Tomato	nucleus	35.18	44.28
Solyc10g019150.1.1	Tomato	nucleus	22.92	35.37
Solyc05g013420.1.1	Tomato	nucleus	25.69	35.14
Solyc05g013430.1.1	Tomato	nucleus	17.79	21.43
Solyc02g082380.1.1	Tomato	nucleus	15.41	17.57
Solyc02g082390.1.1	Tomato	nucleus	16.21	14.59
TraesCS7A01G135600.1	Wheat	cytosol	2.77	3.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:K4D6G6	InterPro:Myb_dom	InterPro:Myb_dom_plants
PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR44191	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
EnsemblPlantsGene:Solyc11g013620.1	EnsemblPlants:Solyc11g013620.1.1	TIGRFAMs:TIGR01557	TMHMM:TMhelix	UniParc:UPI000276A5C6	SEG:seg

Description

No Description!

Coordinates

chr11:+:6866998..6868945

Molecular Weight (calculated)

28749.7 Da

IEP (calculated)

8.360

GRAVY (calculated)

-0.096

Length

253 amino acids

Sequence
(BLAST)

001: MLYLLIDGCF KGLSKNYRFL ILFAFFLVML NCSTVIMLTM QVEAVAIYCI CCIVCVFGCI SWSIDSRCAG KIWSFSLDRS CRCSAVCVCL NQMIKKGNRW
101: TEDEQRAFLK GLDFHGKGNW TNIAKDFVPS RTPTQVASHA QKYFVRLLDA NSNSNERKKK RKKSSVFDLR IEKTEDTDQA MVPLGNNQET HNVPNYMMKS
201: VPTVMPLTWV YIYPYNDHYA STSISTTTFD KPISGISCSS SSSSEDDNLE LKL

Best Arabidopsis Sequence Match ( AT5G61620.1 )
(BLAST)

001: MVKETVTVAK TCSHCGHNGH NARTCLNGVN KASVKLFGVN ISSDPIRPPE VTALRKSLSL GNLDALLAND ESNGSGDPIA AVDDTGYHSD GQIHSKKGKT
101: AHEKKKGKPW TEEEHRNFLI GLNKLGKGDW RGIAKSFVST RTPTQVASHA QKYFIRLNVN DKRKRRASLF DISLEDQKEK ERNSQDASTK TPPKQPITGI
201: QQPVVQGHTQ TEISNRFQNL SMEYMPIYQP IPPYYNFPPI MYHPNYPMYY ANPQVPVRFV HPSGIPVPRH IPIGLPLSQP SEASNMTNKD GLDLHIGLPP
301: QATGASDLTG HGVIHVK

Arabidopsis Description

Probable transcription factor At5g61620 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKF9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.