Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 1
- extracellular 1
- endoplasmic reticulum 1
- golgi 1
- vacuole 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
25464976
nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0038g01880.t01 | Wine grape | cytosol | 36.79 | 58.71 |
| GSMUA_Achr11P... | Banana | cytosol | 26.95 | 35.09 |
| CDY22413 | Canola | cytosol | 54.58 | 23.04 |
| KRH24149 | Soybean | nucleus | 57.14 | 21.57 |
| AT4G38760.1 | Thale cress | cytosol | 55.66 | 21.02 |
| CDX72740 | Canola | cytosol | 54.58 | 20.57 |
| Bra033575.1-P | Field mustard | cytosol | 54.58 | 20.34 |
| HORVU7Hr1G031100.1 | Barley | cytosol | 41.24 | 15.59 |
| TraesCS7D01G153000.1 | Wheat | cytosol, plasma membrane, plastid | 40.97 | 15.49 |
| TraesCS7B01G055100.1 | Wheat | cytosol, plasma membrane, plastid | 40.84 | 15.43 |
| TraesCS7A01G151100.1 | Wheat | plastid | 40.84 | 15.43 |
| Zm00001d030340_P037 | Maize | plasma membrane | 37.2 | 15.36 |
| OQU82713 | Sorghum | plastid | 40.16 | 15.2 |
| VIT_03s0038g01920.t01 | Wine grape | plasma membrane | 21.29 | 11.86 |
| GSMUA_Achr11P... | Banana | plasma membrane | 10.38 | 5.8 |
| Zm00001d030342_P001 | Maize | plastid | 0.4 | 2.1 |
| VIT_03s0038g01870.t01 | Wine grape | cytosol | 0.27 | 1.83 |
| Solyc11g039890.1.1 | Tomato | cytosol | 0.27 | 1.2 |
| Os10t0154566-00 | Rice | plastid | 0.13 | 0.63 |
| Solyc11g039870.1.1 | Tomato | nucleus | 0.81 | 0.54 |
| KRH29119 | Soybean | mitochondrion | 0.13 | 0.23 |
| PGSC0003DMT400056702 | Potato | endoplasmic reticulum, extracellular, plastid | 0.0 | 0.0 |
| Os10t0154600-01 | Rice | peroxisome, plasma membrane, plastid | 0.0 | 0.0 |
Protein Annotations
| MapMan:23.5.1.1.2.2 | GO:GO:0003674 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006810 | GO:GO:0006913 | GO:GO:0008150 | GO:GO:0017056 | UniProt:K4D7W4 | InterPro:Nucleoporin_Nup188 |
| PFAM:PF10487 | PANTHER:PTHR31431 | EnsemblPlantsGene:Solyc11g039880.1 | EnsemblPlants:Solyc11g039880.1.1 | UniParc:UPI0002769E09 | SEG:seg |
Description
No Description!
Coordinates
chr11:+:41526343..41552019
Molecular Weight (calculated)
83357.6 Da
IEP (calculated)
4.429
GRAVY (calculated)
0.354
Length
742 amino acids
Sequence
(BLAST)
(BLAST)
001: MYYLSYSSPN AVYIATRSQD AFIVDEAQKL ISDGLDRKFF SVLQENLHSN FPENMDVDLY TLWAEEIVTE DNVVLDVLFL IFYEFCPCTG ELWKKLCLLY
101: EGFISNSYNF GRLAVSAEAV SSIYHAKLQL LLILIETLDL ENLLQMVHDE TPFRHGYVTF SLSEVEEIDA MVSTFDVFEN KESGPLVLAW AVFLCLISSL
201: PGKEENSILM EIDHIGYVRQ AFEAGSLSSF LEIIENDILR DFDGPITGFR SVLRTFLSAF IASYEINLQL EDGNLKLILD ILCKIYQGEE SLCTQFWDRE
301: SFVDGPIRCL LCSLEGEFPF RTAELLQLLT ALCEGAWPAE CVFNFLDKST GLSSPVDISS CAIVNDASQT VMVVQPLHLP GIEGLVIPSG TRGHLLKMID
401: RDIALVRWEF PQSGIVVLLL RLAQGLYLEK TSEIVMTLGF LSRLVTFNMG VCYSLLDLGG YMHDEMNSPT EHLRINVAEI ICAFIKNLSP DCSGVELMSM
501: GVKILAKMLK CSPYHVSRLI VQANIFDVAF KTNPFKVDSN GLSSGSWLLS GRLAKMLLID CEQNDCQLTL SVLDFTMQLM DSGMENDVVL ALVIFSIQYV
601: LVNHEFWNYK NKHTRWKVTL KVLEVLKKCI LSISYIQKLG EVVKDILFGD SSIHNALCRL VCTTSDVLEK LYFSRLYGLT DIEGLQQAIV LGLDILSSML
701: SDFSMVVPTF TVFCQAVISQ TAKPVPVVTA VISLMSFFRN PC
101: EGFISNSYNF GRLAVSAEAV SSIYHAKLQL LLILIETLDL ENLLQMVHDE TPFRHGYVTF SLSEVEEIDA MVSTFDVFEN KESGPLVLAW AVFLCLISSL
201: PGKEENSILM EIDHIGYVRQ AFEAGSLSSF LEIIENDILR DFDGPITGFR SVLRTFLSAF IASYEINLQL EDGNLKLILD ILCKIYQGEE SLCTQFWDRE
301: SFVDGPIRCL LCSLEGEFPF RTAELLQLLT ALCEGAWPAE CVFNFLDKST GLSSPVDISS CAIVNDASQT VMVVQPLHLP GIEGLVIPSG TRGHLLKMID
401: RDIALVRWEF PQSGIVVLLL RLAQGLYLEK TSEIVMTLGF LSRLVTFNMG VCYSLLDLGG YMHDEMNSPT EHLRINVAEI ICAFIKNLSP DCSGVELMSM
501: GVKILAKMLK CSPYHVSRLI VQANIFDVAF KTNPFKVDSN GLSSGSWLLS GRLAKMLLID CEQNDCQLTL SVLDFTMQLM DSGMENDVVL ALVIFSIQYV
601: LVNHEFWNYK NKHTRWKVTL KVLEVLKKCI LSISYIQKLG EVVKDILFGD SSIHNALCRL VCTTSDVLEK LYFSRLYGLT DIEGLQQAIV LGLDILSSML
701: SDFSMVVPTF TVFCQAVISQ TAKPVPVVTA VISLMSFFRN PC
0001: MANPNSVDSS LWWDPFDSLL TDLENASLSD DLPQPIAKKL EENHAWFVGT LSMFKPPSEK SKEALNSDLV KIKEHQLVIK PQLKDKALRI SSHLNLDEIQ
0101: SYILVERSME QEYGTTDSVA QELTQEFIDM ILLQYYIQRQ CLLKCTKRIL IHALYAPREE SSIKEEAVKL ISDGLERRQS SVLEDLLSSC FPKNMDVNLF
0201: TLWAEETLIE DNLILDILFL IYNESYCSCN GERWRKLCSF YKGILSGSYN FSKLAVSVEA QHSACRVQIQ LLMILIETLD MENLLQMVHD GVPFRSGTCV
0301: FSIVDVQEMD ATISSLNTSE VNEAGPLVLA WAVFLCLISS LPGKEESPFL MDIDHVSYVH QAFEAASLSY FLEILQSNLL NDFDGPISGH RSVVRTFISA
0401: FIASYEINLQ LEDGTLELIL DILSKVYQGE ESLCCQFWDR KSFVDGPIRC LLFDLESEFP FRSAEFIRLL SSLSEGSWPA ECVYNFLDKS VGVSTLFDIT
0501: SDSPADDASQ LVETSRPLHI PGLEGLVIPS NTRGRILRVI SENTVLVRWE YSLSGIIVLI IRLANKLYIG NNREAFVTLE LLRRMVTFNK AVCFSLLNIS
0601: HFFYVQESYV NGKMESDVRV VDIICNSVRS LTFDSGGAAV MAMAIDILAK LLRCSPSSVA PMVLKSNIFD MTSCSDVPDS GYNISLSGSW SLSGKLAKMI
0701: LIDCEKNDTS CPLVISVLEF TMQLVEGGLE NDVVFALVVF SLQYILASHE YWKYNHGNMR WKVTLKVIEL MKTCLRFSKF STKLRDVLLD ILLNDASVHS
0801: ALFRIICTTT QNLENLCSSR FIEPAEIEGW QLAIVSVLDV LNVILSQFSE STHSGLPVFH QAMLSSTTKP ISVVAAITSL ISYFRNPTIQ VCAAQVLSKL
0901: FALAESSQLY IISNAGFGLD NKQITDLRNS VTQIVLDLSG QNEHLVVATL KLLTVAARFQ PALLVAIFDS DEDSDSSNVK QSRKDASSIP DWACKSRLLH
1001: TILQYVERAT DFVDRHTDIL LGLLDFLKTL WQEAGQYANM LEPFKASKKL WQEFSDIISQ ASKIKDSTVG SLGKEEISKL LVKYQCQASV LEIMACNMFL
1101: YKKLLFAESL KKPCVETKKT ASNGVSPPKL TWTADSDPKD IFSKWCDISV LDGIIQSVSS LDGESEINFQ AKVAAVLLIV HLIVKLETSG AGALSMVLVE
1201: KIKLISETLC AQPAFSELLA QYSKLGYSGG KELMPMIFSD LYCHLQGKLE GRDIPTGPFK ELFQFLVETS FWEKYKQKTN KDVNMALGDC LFDTQQIQTE
1301: LGIDIWDFSE WKTSKTTAEE MLNYMQRANS MVLLSTSQLS VLHALISVLI LYEDNSLEES AAAERKIPSR VTLLSIDKVC RKFCTTVDSL ASLWDAPKIV
1401: FDILTAQADL LSRLLKSAKK NLSLSVCALV LRNVGPGLKI LGSLRHSNAI LKKTINLLLE VLLLVVGFGS DNSNSSGMGH MVLAKDFAEI SDATIGLLPL
1501: LCNFMGNPEY LTLCLTTVDL ILRNFLTPET WFPIIQSQLR LQHVILQLQD KKSTTSVSAI LKFFLTIAQV HGGAQMLLNS GFFSTLRALL MEFPDGMSTL
1601: VSDNEKGSLL EKTEKTQHIW GIGLAVVTAM VHSLGSVSAG ADIVESVISY FFLEKGYMIS YYLAAPDFPS DDRDKVRLRS QRTWTSLAYL RVTEHTLLLL
1701: CALASHWRSW VKIMKDMDSP LREMTIHLLA FISKGAQRLR ESQSHISHLL CPPVAKEEFD SCKRPSFINT KHGWFSLAPL VCVGKPKITA VSISTALVVR
1801: GDTTEHPGSV PQSQFSDSVA IQIYRVASLL LKFLCLQAEG VVTRAEEVGY VDIAHFPELP EPEILHGLQD QATAIVAELC DNYKSKEIPD EVKKLCLMLI
1901: QTTEMSLYLE LCVVQVCRIH PVFGRVDNFS KDLKKLVKAA EVHTYLEPSI DSLKKIAAFL YPGSL
0101: SYILVERSME QEYGTTDSVA QELTQEFIDM ILLQYYIQRQ CLLKCTKRIL IHALYAPREE SSIKEEAVKL ISDGLERRQS SVLEDLLSSC FPKNMDVNLF
0201: TLWAEETLIE DNLILDILFL IYNESYCSCN GERWRKLCSF YKGILSGSYN FSKLAVSVEA QHSACRVQIQ LLMILIETLD MENLLQMVHD GVPFRSGTCV
0301: FSIVDVQEMD ATISSLNTSE VNEAGPLVLA WAVFLCLISS LPGKEESPFL MDIDHVSYVH QAFEAASLSY FLEILQSNLL NDFDGPISGH RSVVRTFISA
0401: FIASYEINLQ LEDGTLELIL DILSKVYQGE ESLCCQFWDR KSFVDGPIRC LLFDLESEFP FRSAEFIRLL SSLSEGSWPA ECVYNFLDKS VGVSTLFDIT
0501: SDSPADDASQ LVETSRPLHI PGLEGLVIPS NTRGRILRVI SENTVLVRWE YSLSGIIVLI IRLANKLYIG NNREAFVTLE LLRRMVTFNK AVCFSLLNIS
0601: HFFYVQESYV NGKMESDVRV VDIICNSVRS LTFDSGGAAV MAMAIDILAK LLRCSPSSVA PMVLKSNIFD MTSCSDVPDS GYNISLSGSW SLSGKLAKMI
0701: LIDCEKNDTS CPLVISVLEF TMQLVEGGLE NDVVFALVVF SLQYILASHE YWKYNHGNMR WKVTLKVIEL MKTCLRFSKF STKLRDVLLD ILLNDASVHS
0801: ALFRIICTTT QNLENLCSSR FIEPAEIEGW QLAIVSVLDV LNVILSQFSE STHSGLPVFH QAMLSSTTKP ISVVAAITSL ISYFRNPTIQ VCAAQVLSKL
0901: FALAESSQLY IISNAGFGLD NKQITDLRNS VTQIVLDLSG QNEHLVVATL KLLTVAARFQ PALLVAIFDS DEDSDSSNVK QSRKDASSIP DWACKSRLLH
1001: TILQYVERAT DFVDRHTDIL LGLLDFLKTL WQEAGQYANM LEPFKASKKL WQEFSDIISQ ASKIKDSTVG SLGKEEISKL LVKYQCQASV LEIMACNMFL
1101: YKKLLFAESL KKPCVETKKT ASNGVSPPKL TWTADSDPKD IFSKWCDISV LDGIIQSVSS LDGESEINFQ AKVAAVLLIV HLIVKLETSG AGALSMVLVE
1201: KIKLISETLC AQPAFSELLA QYSKLGYSGG KELMPMIFSD LYCHLQGKLE GRDIPTGPFK ELFQFLVETS FWEKYKQKTN KDVNMALGDC LFDTQQIQTE
1301: LGIDIWDFSE WKTSKTTAEE MLNYMQRANS MVLLSTSQLS VLHALISVLI LYEDNSLEES AAAERKIPSR VTLLSIDKVC RKFCTTVDSL ASLWDAPKIV
1401: FDILTAQADL LSRLLKSAKK NLSLSVCALV LRNVGPGLKI LGSLRHSNAI LKKTINLLLE VLLLVVGFGS DNSNSSGMGH MVLAKDFAEI SDATIGLLPL
1501: LCNFMGNPEY LTLCLTTVDL ILRNFLTPET WFPIIQSQLR LQHVILQLQD KKSTTSVSAI LKFFLTIAQV HGGAQMLLNS GFFSTLRALL MEFPDGMSTL
1601: VSDNEKGSLL EKTEKTQHIW GIGLAVVTAM VHSLGSVSAG ADIVESVISY FFLEKGYMIS YYLAAPDFPS DDRDKVRLRS QRTWTSLAYL RVTEHTLLLL
1701: CALASHWRSW VKIMKDMDSP LREMTIHLLA FISKGAQRLR ESQSHISHLL CPPVAKEEFD SCKRPSFINT KHGWFSLAPL VCVGKPKITA VSISTALVVR
1801: GDTTEHPGSV PQSQFSDSVA IQIYRVASLL LKFLCLQAEG VVTRAEEVGY VDIAHFPELP EPEILHGLQD QATAIVAELC DNYKSKEIPD EVKKLCLMLI
1901: QTTEMSLYLE LCVVQVCRIH PVFGRVDNFS KDLKKLVKAA EVHTYLEPSI DSLKKIAAFL YPGSL
Arabidopsis Description
Protein of unknown function (DUF3414) [Source:TAIR;Acc:AT4G38760]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.