Factsheet for TraesCS1A01G362000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G165100.1
TraesCS2B01G191300.1
TraesCS2D01G172200.1
TraesCS4A01G160900.1
TraesCS4B01G160100.1
TraesCS4D01G156000.1
TraesCS5A01G245400.1
TraesCS5B01G242900.1
TraesCS5D01G252200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	TraesCS2A01G165100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2B01G191300.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2D01G172200.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4A01G160900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4B01G160100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4D01G156000.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5A01G245400.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5B01G242900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5D01G252200.1	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G366800.1	Wheat	nucleus	98.82	98.82
TraesCS1B01G378900.1	Wheat	nucleus	98.22	98.52
TraesCS1A01G308300.1	Wheat	nucleus	85.06	85.31
Os05t0490700-01	Rice	extracellular	82.54	83.04
Zm00001d010646_P001	Maize	plastid	79.29	82.21
EES19725	Sorghum	nucleus	80.47	80.71
Zm00001d038541_P002	Maize	nucleus	81.21	79.34
TraesCS3A01G336100.1	Wheat	nucleus	65.98	59.87
CDY04931	Canola	cytosol, extracellular, nucleus	5.77	51.32
TraesCS5A01G140500.1	Wheat	nucleus	51.04	50.59
Bra009408.1-P	Field mustard	nucleus	36.54	48.24
KRH56252	Soybean	nucleus	13.91	44.13
Bra028776.1-P	Field mustard	nucleus	41.27	43.94
Solyc09g082050.2.1	Tomato	nucleus	41.86	43.74
Bra005829.1-P	Field mustard	nucleus	41.27	43.26
CDY11319	Canola	nucleus	41.27	43.26
VIT_13s0047g00120.t01	Wine grape	nucleus	45.56	43.02
CDX80930	Canola	nucleus	40.98	43.01
CDX68245	Canola	nucleus	42.31	42.94
TraesCS3A01G385200.1	Wheat	plastid	46.01	42.84
CDY11129	Canola	nucleus	42.31	42.75
KRH62706	Soybean	nucleus	42.16	42.73
CDY61331	Canola	nucleus	42.16	42.6
PGSC0003DMT400077329	Potato	nucleus	42.16	42.47
AT1G73100.1	Thale cress	nucleus	41.86	42.3
KRH20576	Soybean	nucleus	42.01	42.2
KRH13229	Soybean	nucleus	42.01	42.2
CDX98805	Canola	nucleus	40.83	42.14
AT5G04940.2	Thale cress	nucleus	41.72	42.09
CDY59935	Canola	nucleus	40.68	41.73
KRH66648	Soybean	nucleus	43.64	41.67
TraesCS4A01G023500.1	Wheat	nucleus	51.33	41.61
Bra009409.1-P	Field mustard	nucleus	40.68	41.35
CDX96449	Canola	nucleus	40.09	41.25
AT2G05900.1	Thale cress	cytoskeleton, cytosol, nucleus	18.79	40.71
Bra016018.1-P	Field mustard	nucleus	40.38	40.33
CDX98804	Canola	nucleus	35.95	39.64
Solyc10g077070.1.1	Tomato	nucleus	41.86	39.64
PGSC0003DMT400018512	Potato	nucleus	41.86	39.41
VIT_08s0040g00360.t01	Wine grape	nucleus	42.9	39.35
CDY14135	Canola	nucleus	41.12	38.5
KRG95012	Soybean	plastid	26.92	37.3
TraesCS3A01G520700.1	Wheat	nucleus	15.24	35.76
AT1G17770.1	Thale cress	nucleus	35.65	34.78
CDY26218	Canola	nucleus	34.02	32.95
CDY66122	Canola	nucleus	33.73	31.93
TraesCS3A01G457800.1	Wheat	mitochondrion, nucleus	24.41	31.07
AT2G24740.1	Thale cress	nucleus	34.47	30.86
TraesCS2A01G235400.1	Wheat	nucleus	29.59	29.85
TraesCS1A01G042900.1	Wheat	nucleus	27.96	29.26
TraesCS3A01G457900.1	Wheat	plastid	23.22	29.02
CDY56214	Canola	nucleus	33.88	28.88
TraesCS3A01G441200.1	Wheat	nucleus	27.96	27.39
CDX70182	Canola	nucleus	40.53	27.08
Bra025949.1-P	Field mustard	nucleus	34.17	25.87
CDY26221	Canola	nucleus	34.17	25.81
TraesCS4A01G100900.1	Wheat	nucleus	25.44	25.6
TraesCS3A01G295200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	12.28	25.0
Bra004258.1-P	Field mustard	nucleus	33.88	24.92
TraesCS1A01G241600.2	Wheat	nucleus	27.81	22.95
TraesCS1A01G117300.1	Wheat	nucleus	29.14	20.8
TraesCS2A01G389600.1	Wheat	mitochondrion, nucleus	27.81	18.65
TraesCS5A01G194500.1	Wheat	plastid	29.88	17.43
TraesCS2A01G478800.1	Wheat	nucleus	14.35	16.17
TraesCS6A01G226600.1	Wheat	nucleus	15.68	15.57
TraesCS2A01G382000.5	Wheat	nucleus	15.24	15.21
TraesCS5A01G197900.1	Wheat	nucleus	20.27	13.81
TraesCS2A01G478000.1	Wheat	mitochondrion, nucleus	15.09	13.69
CDY01852	Canola	plasma membrane	35.21	12.82
TraesCS6A01G274600.1	Wheat	nucleus	17.31	7.17
CDY53193	Canola	mitochondrion	0.0	0.0
CDX89821	Canola	cytosol	0.0	0.0
CDX86631	Canola	cytosol	0.0	0.0
CDY21127	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987
GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0034968
InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987
PFAM:PF00856	PFAM:PF02182	PFAM:PF05033	PFscan:PS50280	PFscan:PS50867	PFscan:PS51015
PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF372	InterPro:PUA-like_sf	InterPro:Pre-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199
SUPFAM:SSF88697	EnsemblPlantsGene:TraesCS1A01G362000	EnsemblPlants:TraesCS1A01G362000.1	:	:	:

Description

No Description!

Coordinates

chr1A:-:542437967..542439997

Molecular Weight (calculated)

74313.4 Da

IEP (calculated)

7.661

GRAVY (calculated)

-0.389

Length

676 amino acids

Sequence
(BLAST)

001: MDRARNFIPG PNQELLDIKP IRSLAPMFPA PMGVNINQSS TPPLVCVTPV GQFPTGFGGG NLPAFGSFTT FSVTANGFSQ AGTSANGAID ATPISAYKTR
101: SSGATALNGD DEPYSGNQTS ASGRKAKKRS AGLSADGSDG VKVKRPKPIY KNLVAGKELA FLPASPNNPR EIVEAVHMTF EALRRRHLQM DETQDASRRA
201: DLKAGAIMMA SNIRANVGKR VGTAPGVEIG DIFYFRMELC IIGLHAPSMG GIDYMSAKFG ADEDSVAICI VAAGGYENED DDTDTLVYSG SGGNSRNTEE
301: RHDQKLERGN LALERSMHRK NEIRVVRGFK DPAMVAGKIY IYDGLYKIQE SWTERTKFGV NCFKYRLQRE PGQRDGAAIW KMTQRWIQDP STRGRVILRD
401: LSSGIESIPV CLVNEVDHEK GPGQFTYTNQ VKYLRPVSSM TPMQGCGCQS VCLPGDANCA CGQHNGGDLP YSSSGVLVCR KPIVYECGEA CHCTLNCRNR
501: VSQKGIRFHF EVFRTANRGW GLRCWEPIRA GAFICEYTGE VIDELKVNLD DSEDDYIFQT VCPGEKTLKW NFGPELIGEQ STYVSAEEFQ PLPIKISAKK
601: MGNVSRFMNH SCSPNVLWQP VQYNHGDDKH PHIMFFALNH IAPMTELTYD YGVVGEETSH RARTCLCGSL TCRGLF

Best Arabidopsis Sequence Match ( AT1G73100.1 )
(BLAST)

001: MQGVPGFNTV PNPNHYDKSI VLDIKPLRSL KPVFPNGNQG PPFVGCPPFG PSSSEYSSFF PFGAQQPTHD TPDLNQTQNT PIPSFVPPLR SYRTPTKTNG
101: PSSSSGTKRG VGRPKGTTSV KKKEKKTVAN EPNLDVQVVK KFSSDFDSGI SAAEREDGNA YLVSSVLMRF DAVRRRLSQV EFTKSATSKA AGTLMSNGVR
201: TNMKKRVGTV PGIEVGDIFF SRIEMCLVGL HMQTMAGIDY IISKAGSDEE SLATSIVSSG RYEGEAQDPE SLIYSGQGGN ADKNRQASDQ KLERGNLALE
301: NSLRKGNGVR VVRGEEDAAS KTGKIYIYDG LYSISESWVE KGKSGCNTFK YKLVRQPGQP PAFGFWKSVQ KWKEGLTTRP GLILPDLTSG AESKPVSLVN
401: DVDEDKGPAY FTYTSSLKYS ETFKLTQPVI GCSCSGSCSP GNHNCSCIRK NDGDLPYLNG VILVSRRPVI YECGPTCPCH ASCKNRVIQT GLKSRLEVFK
501: TRNRGWGLRS WDSLRAGSFI CEYAGEVKDN GNLRGNQEED AYVFDTSRVF NSFKWNYEPE LVDEDPSTEV PEEFNLPSPL LISAKKFGNV ARFMNHSCSP
601: NVFWQPVIRE GNGESVIHIA FFAMRHIPPM AELTYDYGIS PTSEARDESL LHGQRTCLCG SEQCRGSFG

Arabidopsis Description

SUVH3Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.