Factsheet for TraesCS1B01G319000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G165100.1
TraesCS2B01G191300.1
TraesCS2D01G172200.1
TraesCS4A01G160900.1
TraesCS4B01G160100.1
TraesCS4D01G156000.1
TraesCS5A01G245400.1
TraesCS5B01G242900.1
TraesCS5D01G252200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	TraesCS2A01G165100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2B01G191300.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2D01G172200.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4A01G160900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4B01G160100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4D01G156000.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5A01G245400.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5B01G242900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5D01G252200.1	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G307700.1	Wheat	nucleus	96.44	96.44
TraesCS1A01G308300.1	Wheat	nucleus	96.14	96.14
HORVU1Hr1G068460.1	Barley	nucleus	94.66	94.66
HORVU0Hr1G001190.1	Barley	nucleus	94.81	89.5
TraesCS1B01G378900.1	Wheat	nucleus	86.05	86.05
Os05t0490700-01	Rice	extracellular	79.67	79.91
Zm00001d010646_P001	Maize	plastid	77.3	79.91
EES19725	Sorghum	nucleus	79.53	79.53
Zm00001d038541_P002	Maize	nucleus	79.97	77.89
TraesCS3B01G366900.1	Wheat	nucleus	65.28	59.22
TraesCS3B01G367200.1	Wheat	nucleus	65.28	59.22
CDY04931	Canola	cytosol, extracellular, nucleus	6.38	56.58
TraesCS5B01G138800.1	Wheat	nucleus	51.63	49.01
Bra009408.1-P	Field mustard	nucleus	36.8	48.44
KRH56252	Soybean	nucleus	14.84	46.95
TraesCS4B01G280000.1	Wheat	nucleus	50.0	46.48
Bra028776.1-P	Field mustard	nucleus	40.65	43.15
Solyc09g082050.2.1	Tomato	nucleus	41.39	43.12
KRH62706	Soybean	nucleus	42.58	43.03
KRH20576	Soybean	nucleus	42.88	42.94
KRH13229	Soybean	nucleus	42.73	42.79
CDY11319	Canola	nucleus	40.95	42.79
Bra005829.1-P	Field mustard	nucleus	40.95	42.79
CDX80930	Canola	nucleus	40.65	42.55
VIT_13s0047g00120.t01	Wine grape	nucleus	45.1	42.46
AT1G73100.1	Thale cress	nucleus	41.99	42.3
PGSC0003DMT400077329	Potato	nucleus	41.84	42.03
CDX98805	Canola	nucleus	40.5	41.68
CDX68245	Canola	nucleus	41.1	41.59
CDY11129	Canola	nucleus	41.25	41.55
TraesCS3B01G417400.1	Wheat	nucleus	51.19	41.42
CDY61331	Canola	nucleus	41.1	41.41
KRH66648	Soybean	nucleus	43.03	40.96
AT5G04940.2	Thale cress	nucleus	40.5	40.75
Bra009409.1-P	Field mustard	nucleus	40.06	40.6
CDY59935	Canola	nucleus	39.61	40.52
AT2G05900.1	Thale cress	cytoskeleton, cytosol, nucleus	18.69	40.38
CDX96449	Canola	nucleus	39.32	40.33
VIT_08s0040g00360.t01	Wine grape	nucleus	43.18	39.48
Bra016018.1-P	Field mustard	nucleus	39.47	39.29
CDX98804	Canola	nucleus	35.31	38.83
Solyc10g077070.1.1	Tomato	nucleus	40.95	38.66
PGSC0003DMT400018512	Potato	nucleus	41.1	38.58
CDY14135	Canola	nucleus	40.36	37.67
KRG95012	Soybean	plastid	25.82	35.66
AT1G17770.1	Thale cress	nucleus	34.57	33.62
CDY26218	Canola	nucleus	33.68	32.52
CDY66122	Canola	nucleus	33.09	31.23
TraesCS2B01G254700.1	Wheat	nucleus	30.27	30.31
TraesCS1B01G055800.1	Wheat	nucleus	28.34	29.8
AT2G24740.1	Thale cress	nucleus	33.23	29.67
CDY56214	Canola	nucleus	33.68	28.63
TraesCS3B01G498100.1	Wheat	nucleus	25.67	27.5
CDX70182	Canola	nucleus	40.06	26.68
TraesCS3B01G498000.1	Wheat	nucleus	25.22	26.44
TraesCS3B01G590300.1	Wheat	nucleus	24.48	26.27
TraesCS3B01G475200.1	Wheat	nucleus	25.52	26.18
TraesCS4B01G203900.1	Wheat	nucleus	25.82	25.7
TraesCS3B01G342100.1	Wheat	nucleus	12.61	25.6
Bra025949.1-P	Field mustard	nucleus	33.83	25.53
CDY26221	Canola	nucleus	33.68	25.36
Bra004258.1-P	Field mustard	nucleus	33.68	24.7
TraesCS2B01G409600.1	Wheat	nucleus	26.85	18.82
TraesCS5B01G190000.1	Wheat	plastid	29.38	17.35
TraesCS1B01G137100.1	Wheat	nucleus, plastid	31.75	16.11
TraesCS2B01G503200.1	Wheat	nucleus	14.24	15.97
TraesCS6B01G255000.1	Wheat	nucleus	15.43	15.27
TraesCS2B01G399300.4	Wheat	nucleus	14.99	14.92
TraesCS2B01G616200.1	Wheat	nucleus	16.02	14.65
TraesCS2B01G501300.2	Wheat	mitochondrion, nucleus	15.88	14.46
TraesCS5B01G185700.3	Wheat	nucleus	22.7	13.8
CDY01852	Canola	plasma membrane	34.87	12.66
TraesCS6B01G302100.2	Wheat	nucleus	17.21	7.15
CDX86631	Canola	cytosol	0.0	0.0
CDY21127	Canola	cytosol	0.0	0.0
CDX89821	Canola	cytosol	0.0	0.0
CDY53193	Canola	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987
GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0034968
InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987
PFAM:PF00856	PFAM:PF02182	PFAM:PF05033	PFscan:PS50280	PFscan:PS50867	PFscan:PS51015
PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF372	InterPro:PUA-like_sf	InterPro:Pre-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199
SUPFAM:SSF88697	EnsemblPlantsGene:TraesCS1B01G319000	EnsemblPlants:TraesCS1B01G319000.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:-:543466732..543468756

Molecular Weight (calculated)

74065.7 Da

IEP (calculated)

7.436

GRAVY (calculated)

-0.409

Length

674 amino acids

Sequence
(BLAST)

001: MDRARNFIPG PNQELLDAKP LRSLAPMFPA PMGVNINQSS TSPLVVVTPV GQFPTGFGAG SLPAFGPFTT FSATANAFSP AGTSANVPID VTPVSAYKTR
101: SSGVTPLNDD GEPYSVSQTS ASERQAKRSA GLAAEGSNGV KVKRPKPIYK NHVSGKLLAF LPTSDSTPRE AVEAVHMTFE ALRRRHLQMD ETLDARRRAD
201: LKAGAIMMAS DIRANVGKRV GTAPGVEIGD IFYFRMELCI IGLHAPSMSG IDYMSAKFGN GEDSVAICIV AAGGYENDDD DTDTLVYSGS GGNSRNTEER
301: HDQKLERGNL ALERSLHRKN EIRVVRGFKD PATLAGKIYI YDGLYKIQES WKERTKFGIN CFKYRLQREP GQRDGAAIWK RTQRWIQNAS TRGKVIQHDL
401: SSGAETFPVC VVNEEDHEKG PGHFTYTTEV KYPRPLSSMK ALQGCGCQSV CLPGDANCAC GQHNEGDLPY SSAGVLVCRK PVIYECGEAC HCSLNCRNRV
501: SQKGIRYHFE VFRTTNRGWG LRCWDPIRAG AFVCEYAGEV IDELQVNLND SEDDYIFQTV CPGEKTLKWN SGPELIGEES TYVSPDEFQP LPIKISAKQI
601: GNVSRFMNHS CSPNVFWQPV QYDHGDDKHP HIMFFALNHI PPMTELTYDY GVVGAGTSRS KTCLCGSLTC RGLF

Best Arabidopsis Sequence Match ( AT1G73100.1 )
(BLAST)

001: MQGVPGFNTV PNPNHYDKSI VLDIKPLRSL KPVFPNGNQG PPFVGCPPFG PSSSEYSSFF PFGAQQPTHD TPDLNQTQNT PIPSFVPPLR SYRTPTKTNG
101: PSSSSGTKRG VGRPKGTTSV KKKEKKTVAN EPNLDVQVVK KFSSDFDSGI SAAEREDGNA YLVSSVLMRF DAVRRRLSQV EFTKSATSKA AGTLMSNGVR
201: TNMKKRVGTV PGIEVGDIFF SRIEMCLVGL HMQTMAGIDY IISKAGSDEE SLATSIVSSG RYEGEAQDPE SLIYSGQGGN ADKNRQASDQ KLERGNLALE
301: NSLRKGNGVR VVRGEEDAAS KTGKIYIYDG LYSISESWVE KGKSGCNTFK YKLVRQPGQP PAFGFWKSVQ KWKEGLTTRP GLILPDLTSG AESKPVSLVN
401: DVDEDKGPAY FTYTSSLKYS ETFKLTQPVI GCSCSGSCSP GNHNCSCIRK NDGDLPYLNG VILVSRRPVI YECGPTCPCH ASCKNRVIQT GLKSRLEVFK
501: TRNRGWGLRS WDSLRAGSFI CEYAGEVKDN GNLRGNQEED AYVFDTSRVF NSFKWNYEPE LVDEDPSTEV PEEFNLPSPL LISAKKFGNV ARFMNHSCSP
601: NVFWQPVIRE GNGESVIHIA FFAMRHIPPM AELTYDYGIS PTSEARDESL LHGQRTCLCG SEQCRGSFG

Arabidopsis Description

SUVH3Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.