Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G357600.1 | Wheat | nucleus | 94.0 | 94.0 |
| TraesCS1D01G362000.1 | Wheat | nucleus | 73.43 | 84.54 |
| HORVU1Hr1G080380.1 | Barley | nucleus | 70.86 | 73.59 |
| TraesCS7B01G036700.1 | Wheat | nucleus | 52.57 | 42.99 |
| TraesCS1B01G283000.1 | Wheat | nucleus | 21.71 | 42.22 |
| TraesCS7B01G093600.1 | Wheat | nucleus | 21.43 | 41.67 |
| TraesCS7B01G019400.1 | Wheat | nucleus | 28.29 | 41.42 |
| TraesCS7B01G036500.1 | Wheat | nucleus | 50.29 | 40.93 |
| Zm00001d050594_P001 | Maize | nucleus | 24.57 | 40.76 |
| Zm00001d006791_P001 | Maize | nucleus | 16.86 | 38.56 |
| TraesCS7B01G019200.1 | Wheat | nucleus | 29.43 | 37.59 |
| KXG21281 | Sorghum | nucleus | 18.57 | 37.57 |
| Zm00001d024809_P001 | Maize | nucleus | 27.71 | 33.92 |
| EES18996 | Sorghum | nucleus | 27.71 | 33.68 |
| EER89573 | Sorghum | nucleus | 29.71 | 32.91 |
| EES18995 | Sorghum | nucleus | 25.71 | 32.61 |
| Zm00001d024814_P001 | Maize | nucleus | 26.0 | 32.38 |
| OQU76057 | Sorghum | nucleus | 28.29 | 32.25 |
| EER88196 | Sorghum | nucleus | 28.86 | 31.96 |
| EER88198 | Sorghum | nucleus | 28.86 | 31.76 |
| Zm00001d045162_P001 | Maize | nucleus | 26.29 | 31.72 |
| EER89299 | Sorghum | nucleus | 26.86 | 30.72 |
| KXG21280 | Sorghum | nucleus | 30.57 | 30.06 |
| KXG21283 | Sorghum | nucleus | 20.57 | 29.51 |
| EER94504 | Sorghum | nucleus | 24.0 | 29.17 |
| EER89387 | Sorghum | nucleus | 25.71 | 28.3 |
| Zm00001d010889_P001 | Maize | plastid | 19.14 | 27.8 |
| OQU77390 | Sorghum | nucleus | 18.0 | 25.82 |
| EES18997 | Sorghum | nucleus | 27.43 | 25.53 |
| OQU77389 | Sorghum | nucleus | 24.29 | 25.45 |
| Zm00001d024810_P001 | Maize | nucleus | 28.0 | 25.13 |
| Os06t0173800-00 | Rice | vacuole | 21.71 | 23.24 |
| KXG21278 | Sorghum | nucleus | 22.57 | 22.97 |
| TraesCS2B01G617700.1 | Wheat | nucleus | 22.29 | 19.55 |
| Solyc02g082380.1.1 | Tomato | nucleus | 11.43 | 18.02 |
| PGSC0003DMT400086891 | Potato | nucleus | 10.0 | 16.2 |
| Solyc02g082390.1.1 | Tomato | nucleus | 12.57 | 15.66 |
| PGSC0003DMT400091980 | Potato | nucleus | 12.0 | 10.42 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR44042 | PANTHER:PTHR44042:SF3 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| EnsemblPlantsGene:TraesCS1B01G374300 | EnsemblPlants:TraesCS1B01G374300.1 | TIGR:cd00167 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1B:-:604562217..604563924
Molecular Weight (calculated)
38987.7 Da
IEP (calculated)
6.259
GRAVY (calculated)
-0.571
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPLVNQGWT SSEEEEARSA IARHNSHTIV YDDKNKRHNN IVDALHELFP SKTRQQVTDL YVNLVVESYM MHSGEERHVV GSNTHSVGPI NLVNNNFGVS
101: DQEIGASNIC GINTMGDHVI GGYGVREEEE AATMNDNGLI FGHALEDTRI METKEAPLMV DKNKMQILEN NITSDQPVVP PRQGRFWTID EHKLFLRGLG
201: VYGRGDWKNI SKHFVTTKTH VQVSSHAQKY FRRLHKRASF GTQRYSINDV GLHDEDPWSM NNSSGPSQTL GSTGLNNETS LGLQAPLSSS IVMNNQPQLW
301: PPFIYSHQVN QQPVWSEHQM LGSTGVVTDG MGNSAPPCQQ GLTCFPLGNV
101: DQEIGASNIC GINTMGDHVI GGYGVREEEE AATMNDNGLI FGHALEDTRI METKEAPLMV DKNKMQILEN NITSDQPVVP PRQGRFWTID EHKLFLRGLG
201: VYGRGDWKNI SKHFVTTKTH VQVSSHAQKY FRRLHKRASF GTQRYSINDV GLHDEDPWSM NNSSGPSQTL GSTGLNNETS LGLQAPLSSS IVMNNQPQLW
301: PPFIYSHQVN QQPVWSEHQM LGSTGVVTDG MGNSAPPCQQ GLTCFPLGNV
001: MTVEEVSDGS VWSREDDIAF ERALANNTDE SEERWEKIAA DVPGKSVEQI KEHYELLVED VTRIESGCVP LPAYGSPEGS NGHAGDEGAS SKKGGNSHAG
101: ESNQAGKSKS DQERRKGIAW TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVGNADV STPQGPITGQ
201: NNSNNNNNNN NNNSSPAVAG GGNKSAKQAV SQAPPGPPMY GTPAIGQPAV GTPVNLPAPP HMAYGVHAAP VPGSVVPGAA MNIGQMPYTM PRTPTAHR
101: ESNQAGKSKS DQERRKGIAW TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVGNADV STPQGPITGQ
201: NNSNNNNNNN NNNSSPAVAG GGNKSAKQAV SQAPPGPPMY GTPAIGQPAV GTPVNLPAPP HMAYGVHAAP VPGSVVPGAA MNIGQMPYTM PRTPTAHR
Arabidopsis Description
SRM1Transcription factor SRM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNN6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.