Factsheet for TraesCS1B01G378900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G165100.1
TraesCS2B01G191300.1
TraesCS2D01G172200.1
TraesCS4A01G160900.1
TraesCS4B01G160100.1
TraesCS4D01G156000.1
TraesCS5A01G245400.1
TraesCS5B01G242900.1
TraesCS5D01G252200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	TraesCS2A01G165100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2B01G191300.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2D01G172200.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4A01G160900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4B01G160100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4D01G156000.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5A01G245400.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5B01G242900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5D01G252200.1	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G366800.1	Wheat	nucleus	99.41	99.11
TraesCS1A01G362000.1	Wheat	nucleus	98.52	98.22
TraesCS1B01G319000.1	Wheat	nucleus	86.05	86.05
Os05t0490700-01	Rice	extracellular	82.79	83.04
Zm00001d010646_P001	Maize	plastid	79.53	82.21
EES19725	Sorghum	nucleus	80.42	80.42
Zm00001d038541_P002	Maize	nucleus	81.45	79.34
TraesCS3B01G367200.1	Wheat	nucleus	66.17	60.03
TraesCS3B01G366900.1	Wheat	nucleus	66.17	60.03
CDY04931	Canola	cytosol, extracellular, nucleus	6.08	53.95
TraesCS5B01G138800.1	Wheat	nucleus	51.34	48.73
Bra009408.1-P	Field mustard	nucleus	36.94	48.63
TraesCS4B01G280000.1	Wheat	nucleus	49.55	46.07
KRH56252	Soybean	nucleus	14.24	45.07
Bra028776.1-P	Field mustard	nucleus	41.69	44.25
Solyc09g082050.2.1	Tomato	nucleus	42.14	43.89
CDY11319	Canola	nucleus	41.69	43.57
Bra005829.1-P	Field mustard	nucleus	41.69	43.57
CDX80930	Canola	nucleus	41.39	43.32
VIT_13s0047g00120.t01	Wine grape	nucleus	45.99	43.3
KRH62706	Soybean	nucleus	42.58	43.03
CDX68245	Canola	nucleus	42.14	42.64
PGSC0003DMT400077329	Potato	nucleus	42.43	42.62
KRH20576	Soybean	nucleus	42.43	42.5
KRH13229	Soybean	nucleus	42.43	42.5
CDY11129	Canola	nucleus	42.14	42.45
CDX98805	Canola	nucleus	41.25	42.44
AT1G73100.1	Thale cress	nucleus	41.99	42.3
CDY61331	Canola	nucleus	41.99	42.3
AT5G04940.2	Thale cress	nucleus	41.99	42.24
KRH66648	Soybean	nucleus	43.77	41.67
CDY59935	Canola	nucleus	40.65	41.58
Bra009409.1-P	Field mustard	nucleus	40.95	41.5
AT2G05900.1	Thale cress	cytoskeleton, cytosol, nucleus	19.14	41.35
TraesCS3B01G417400.1	Wheat	nucleus	50.89	41.18
CDX96449	Canola	nucleus	40.06	41.1
Bra016018.1-P	Field mustard	nucleus	40.36	40.18
Solyc10g077070.1.1	Tomato	nucleus	42.28	39.92
PGSC0003DMT400018512	Potato	nucleus	42.43	39.83
CDX98804	Canola	nucleus	36.2	39.8
VIT_08s0040g00360.t01	Wine grape	nucleus	43.32	39.62
CDY14135	Canola	nucleus	41.54	38.78
KRG95012	Soybean	plastid	27.0	37.3
AT1G17770.1	Thale cress	nucleus	36.05	35.06
CDY26218	Canola	nucleus	33.98	32.81
CDY66122	Canola	nucleus	33.68	31.79
AT2G24740.1	Thale cress	nucleus	34.87	31.13
TraesCS2B01G254700.1	Wheat	nucleus	29.67	29.72
TraesCS1B01G055800.1	Wheat	nucleus	27.89	29.33
CDY56214	Canola	nucleus	34.12	29.0
CDX70182	Canola	nucleus	40.8	27.17
TraesCS3B01G498100.1	Wheat	nucleus	25.07	26.87
TraesCS3B01G475200.1	Wheat	nucleus	26.11	26.79
TraesCS3B01G590300.1	Wheat	nucleus	24.63	26.43
TraesCS3B01G498000.1	Wheat	nucleus	25.07	26.28
TraesCS4B01G203900.1	Wheat	nucleus	26.11	26.0
Bra025949.1-P	Field mustard	nucleus	34.12	25.76
CDY26221	Canola	nucleus	34.12	25.7
Bra004258.1-P	Field mustard	nucleus	34.12	25.03
TraesCS3B01G342100.1	Wheat	nucleus	12.31	25.0
TraesCS2B01G409600.1	Wheat	nucleus	28.04	19.65
TraesCS5B01G190000.1	Wheat	plastid	29.82	17.62
TraesCS2B01G503200.1	Wheat	nucleus	14.69	16.47
TraesCS1B01G137100.1	Wheat	nucleus, plastid	31.6	16.04
TraesCS6B01G255000.1	Wheat	nucleus	16.02	15.86
TraesCS2B01G399300.4	Wheat	nucleus	15.43	15.36
TraesCS2B01G616200.1	Wheat	nucleus	15.88	14.52
TraesCS2B01G501300.2	Wheat	mitochondrion, nucleus	15.58	14.19
TraesCS5B01G185700.3	Wheat	nucleus	22.4	13.62
CDY01852	Canola	plasma membrane	35.46	12.88
TraesCS6B01G302100.2	Wheat	nucleus	17.36	7.21
CDY21127	Canola	cytosol	0.0	0.0
CDY53193	Canola	mitochondrion	0.0	0.0
CDX89821	Canola	cytosol	0.0	0.0
CDX86631	Canola	cytosol	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987
GO:GO:0016043	GO:GO:0016571	GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0034968
InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214	InterPro:IPR003105	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987
PFAM:PF00856	PFAM:PF02182	PFAM:PF05033	PFscan:PS50280	PFscan:PS50867	PFscan:PS51015
PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF372	InterPro:PUA-like_sf	InterPro:Pre-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199
SUPFAM:SSF88697	EnsemblPlantsGene:TraesCS1B01G378900	EnsemblPlants:TraesCS1B01G378900.1	:	:	:

Description

No Description!

Coordinates

chr1B:+:611523524..611525548

Molecular Weight (calculated)

74091.0 Da

IEP (calculated)

7.661

GRAVY (calculated)

-0.397

Length

674 amino acids

Sequence
(BLAST)

001: MDRARNFIPG PNQELLDIKP IRSLAPMFPA PMGVNINQSS TPPLVCVTPV GQFPTGFGGG NLPAFGSFAT FNATVNGFSQ AGTSANGAID ATPISAYKTR
101: SGATALGDDE PYSGNQTSAS GRKAKKRSAG LSADSSDGVK AKRPKPVYKN LVAGKELAFL PASPNNPREI VEAVHMTFEA LRRRHLQMDE TQDASRRADL
201: KAGAIMMASN IRANVGKRVG TAPGVEIGDI FYFRMELCII GLHAPSMGGI DYMSAKFGAD EDSVAICIVA AGGYENEDDD TDTLVYSGSG GNSRNTEERH
301: DQKLERGNLA LERSMHRKNE IRVVRGFKDP AMVAGKIYIY DGLYKIQESW TERTKFGVNC FKYRLQREPG QRDGAAIWKM TQRWIQDPST RGRVILRDLS
401: SGTESIPVCL VNEVDHEKGP GQFTYTNQVK YLRPVSSMTP MQGCGCQSVC LPGDANCACG QHNGGDLPYS SSGVLVCRKP IVYECGEACH CTLNCRNRVS
501: QKGIRFHFEV FRTANRGWGL RCWEPIRAGA FICEYTGEVI DELKVNLDDS EDDYIFQTVC PGEKTLKWNF GPELIGEQST YVSAEEFQPL PIKISAKKMG
601: NVSRFMNHSC SPNVFWQPVQ YNHGDDKHPH IMFFALNHIA PMTELTYDYG VVGEETSHRA KTCLCGSLTC RGLF

Best Arabidopsis Sequence Match ( AT5G04940.1 )
(BLAST)

001: MERNGGHYTD KTRVLDIKPL RTLRPVFPSG NQAPPFVCAP PFGPFPPGFS SFYPFSSSQA NQHTPDLNQA QYPPQHQQPQ NPPPVYQQQP PQHASEPSLV
101: TPLRSFRSPD VSNGNAELEG STVKRRIPKK RPISRPENMN FESGINVADR ENGNRELVLS VLMRFDALRR RFAQLEDAKE AVSGIIKRPD LKSGSTCMGR
201: GVRTNTKKRP GIVPGVEIGD VFFFRFEMCL VGLHSPSMAG IDYLVVKGET EEEPIATSIV SSGYYDNDEG NPDVLIYTGQ GGNADKDKQS SDQKLERGNL
301: ALEKSLRRDS AVRVIRGLKE ASHNAKIYIY DGLYEIKESW VEKGKSGHNT FKYKLVRAPG QPPAFASWTA IQKWKTGVPS RQGLILPDMT SGVESIPVSL
401: VNEVDTDNGP AYFTYSTTVK YSESFKLMQP SFGCDCANLC KPGNLDCHCI RKNGGDFPYT GNGILVSRKP MIYECSPSCP CSTCKNKVTQ MGVKVRLEVF
501: KTANRGWGLR SWDAIRAGSF ICIYVGEAKD KSKVQQTMAN DDYTFDTTNV YNPFKWNYEP GLADEDACEE MSEESEIPLP LIISAKNVGN VARFMNHSCS
601: PNVFWQPVSY ENNSQLFVHV AFFAISHIPP MTELTYDYGV SRPSGTQNGN PLYGKRKCFC GSAYCRGSFG

Arabidopsis Description

SUVH1Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FF80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.