Factsheet for TraesCS1D01G314900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G314400.2	Wheat	nucleus	95.43	95.43
TraesCS1B01G326700.2	Wheat	nucleus	94.16	94.16
HORVU1Hr1G067100.2	Barley	nucleus	89.34	89.45
TraesCS6D01G309500.4	Wheat	nucleus	24.37	72.18
KXG24287	Sorghum	nucleus	45.05	45.51
Zm00001d035113_P001	Maize	nucleus	44.04	41.41
Zm00001d017507_P001	Maize	nucleus	26.4	39.17
Os03t0840500-00	Rice	cytosol, nucleus	20.43	37.7
OQU75762	Sorghum	nucleus	31.85	31.1
Zm00001d017505_P003	Maize	plastid	44.29	30.72
GSMUA_Achr2P23110_001	Banana	nucleus	4.95	27.27
Bra033600.1-P	Field mustard	endoplasmic reticulum	8.25	20.83
CDY56766	Canola	nucleus	13.96	20.52
CDY12124	Canola	nucleus	15.1	20.2
Bra010701.1-P	Field mustard	nucleus	14.97	20.0
CDX90315	Canola	nucleus	14.85	19.76
CDX72715	Canola	nucleus	12.44	18.88
AT4G39160.2	Thale cress	nucleus	14.72	18.59
CDX87111	Canola	nucleus	12.06	17.59
KRG92007	Soybean	nucleus	11.29	17.15
CDY16866	Canola	vacuole	11.68	16.91
PGSC0003DMT400045728	Potato	nucleus	14.59	16.11
Solyc02g081640.2.1	Tomato	nucleus	14.34	16.03
KRH34776	Soybean	nucleus	10.03	15.86
VIT_03s0038g04460.t01	Wine grape	nucleus	17.77	13.3
KRH27726	Soybean	nucleus	14.34	11.92
KRH77688	Soybean	nucleus	14.09	11.87

Protein Annotations

Gene3D:1.20.58.1880	MapMan:15.4.3.2	MapMan:15.5.2.2	GO:GO:0000126	GO:GO:0001026	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006383	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017884	PFAM:PF15963	PFscan:PS51293	PANTHER:PTHR22929
InterPro:SANT/Myb	InterPro:SANT_dom	SMART:SM00717	SUPFAM:SSF46689	InterPro:TFIIIB_B''	EnsemblPlantsGene:TraesCS1D01G314900
EnsemblPlants:TraesCS1D01G314900.1	TIGR:cd00167	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:-:410464783..410468208

Molecular Weight (calculated)

87429.9 Da

IEP (calculated)

4.778

GRAVY (calculated)

-1.038

Length

788 amino acids

Sequence
(BLAST)

001: MIDDEANFDD IIDAPAEVEA AAKFHPNKLR GKLWKKSVPS RSVVPNRTVE TSDEKALALS QDNLSQGLVT NQGIASSAVL GSETIGGAEA CGGTIYTPSD
101: DVLAVSSVDR VSQNDDPHDD PSEVATLQEN LVVSETQASS THPTSKTVDD LADFGELFDT HSEEENVAKS KLKIKVKLSK AASKSRKTGQ KKAASTVDVV
201: SQNKEDGNDD VRGCNDEQAQ APRHEEYVQT SDSQPPLGTD DGTVDNFVNH IRILEEPGPE ETAAKLRPKS QRKPGRASSK AVGTSDDYAA ANLKDINASV
301: DIDSQDGLIN PHTDDTQPIF GEPSAEAAAT FLLDLGKKKG KGKSVTFILP DDYEGVAATD TNHNDIGSDE NLNTLPQQAP QKHCLTEEHS DDQEYTDRES
401: QYYEGERSDH GVEQQSKLDV GKQELSMKLR SRTEIQKVGL SEHIVDDHLD EDFVEPSAAE QNNDSGDENT AGGKQKAPRK SRKKDPNKEP LRGSKRTSTK
501: STSEKSQPNQ QKNKSEVSSR GRKRALKDTM TEQPEKKLTH RIRQKRAQEV QTLLQKPDHE IDRMKLSVTH LRLLQEARER IQSKTPSGPS SSNQSSSRFG
601: DTDDFDPFGD NYDNDRTENQ ALENATKLNY HSYMDKKTRA KWTKSDTDLF YQGLQQFGSD FAMIQQLFPD KSRDQVRQKF KSEDKKHPMQ VHDAILHRSR
701: DNLYLKQVMK QLNIEDSLKD INITQKQEVA PTEGNTGNDV ISETNTFSVE NVSNLSDEEM GTHQSEVKEG EDVAGNADDV DLDVFDWY

Best Arabidopsis Sequence Match ( AT4G39160.1 )
(BLAST)

001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M

Arabidopsis Description

Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.