Factsheet for TraesCS2D01G478100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
plasma membrane 1
extracellular 1
endoplasmic reticulum 1
golgi 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G503200.1	Wheat	nucleus	95.82	95.34
TraesCS2A01G478800.1	Wheat	nucleus	94.65	94.33
TraesCS6D01G208400.1	Wheat	nucleus	75.75	66.52
Zm00001d051126_P004	Maize	nucleus	49.5	58.38
Os02t0621100-01	Rice	nucleus	63.88	51.55
OQU85329	Sorghum	nucleus	55.69	49.12
CDX92067	Canola	nucleus	34.95	44.28
AT3G04380.1	Thale cress	nucleus	35.28	42.89
PGSC0003DMT400051920	Potato	nucleus	34.95	41.06
GSMUA_Achr1P20340_001	Banana	nucleus	46.66	39.3
VIT_05s0049g01800.t01	Wine grape	nucleus	36.45	38.93
CDY49341	Canola	nucleus	35.95	38.6
KRH34133	Soybean	nucleus	40.97	35.71
KRH68776	Soybean	nucleus	40.3	35.6
KRG92731	Soybean	nucleus	41.47	34.78
TraesCS2D01G378500.3	Wheat	nucleus	38.63	34.07
KRG97025	Soybean	nucleus	16.05	33.8
KRG95723	Soybean	nucleus	40.8	33.7
Bra036004.1-P	Field mustard	nucleus	33.95	32.48
CDY14903	Canola	nucleus	34.28	32.03
VIT_07s0005g04190.t01	Wine grape	mitochondrion, nucleus	44.31	31.25
PGSC0003DMT400044180	Potato	nucleus	40.13	31.13
TraesCS2D01G477200.1	Wheat	mitochondrion, nucleus	38.29	31.03
Solyc09g090630.1.1	Tomato	nucleus	40.3	30.35
AT5G43990.9	Thale cress	nucleus	37.46	30.27
Solyc09g072890.1.1	Tomato	nucleus	41.14	29.82
KRH19618	Soybean	nucleus	40.97	29.81
Solyc06g083760.2.1	Tomato	nucleus	42.81	29.73
KRH32246	Soybean	nucleus	40.8	29.72
CDX94744	Canola	nucleus	33.95	29.64
CDY22319	Canola	nucleus	34.45	29.22
AT1G04050.1	Thale cress	nucleus	35.79	29.16
Bra001104.1-P	Field mustard	nucleus	36.45	28.84
TraesCS2D01G566400.1	Wheat	nucleus	35.45	28.77
Bra033710.1-P	Field mustard	nucleus	34.45	27.47
CDX96935	Canola	nucleus	34.45	26.28
CDY42922	Canola	plasma membrane, vacuole	35.45	25.6
TraesCS3D01G307900.1	Wheat	nucleus	14.05	25.3
Bra040197.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	35.62	22.61
TraesCS1D01G307700.1	Wheat	nucleus	16.72	14.84
TraesCS1D01G366800.1	Wheat	nucleus	16.72	14.79
TraesCS3D01G433900.1	Wheat	nucleus	17.06	14.78
TraesCS5D01G152000.1	Wheat	nucleus	16.56	14.39
TraesCS1D01G043400.1	Wheat	nucleus	14.88	13.91
TraesCS3D01G329100.1	Wheat	nucleus	16.56	13.32
TraesCS4D01G278500.1	Wheat	nucleus	17.73	12.94
TraesCS2D01G240000.1	Wheat	nucleus	14.55	12.89
TraesCS3D01G450600.1	Wheat	nucleus	14.55	12.81
TraesCS4D01G204500.1	Wheat	nucleus	14.55	12.81
TraesCS3D01G450700.1	Wheat	nucleus	14.88	12.73
TraesCS1D01G241500.1	Wheat	nucleus	16.05	11.72
TraesCS3D01G378200.1	Wheat	plastid	11.87	10.37
TraesCS2D01G389100.1	Wheat	nucleus	15.72	9.79
TraesCS5D01G197700.2	Wheat	plastid	17.06	8.99
TraesCS1D01G118300.1	Wheat	nucleus, plastid	16.89	8.25
TraesCS5D01G193000.2	Wheat	nucleus	13.38	7.12
TraesCS6D01G254900.2	Wheat	nucleus	18.9	7.0
TraesCS5D01G192900.1	Wheat	cytosol	0.84	3.07
CDY42923	Canola	mitochondrion	0.0	0.0
CDX92068	Canola	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	Gene3D:1.10.8.850	MapMan:12.3.3.7	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016740
GO:GO:0018024	GO:GO:0019538	GO:GO:0034968	InterPro:IPR001214	InterPro:IPR007728	InterPro:IPR025776
PFAM:PF00856	PFAM:PF05033	PFAM:PF10440	PFscan:PS50280	PFscan:PS50867	PFscan:PS51580
PANTHER:PTHR22884	PANTHER:PTHR22884:SF459	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317	SMART:SM00468
SUPFAM:SSF82199	InterPro:SUVR4/1/2	EnsemblPlantsGene:TraesCS2D01G478100	EnsemblPlants:TraesCS2D01G478100.1	InterPro:WIYLD_domain	SEG:seg

Description

No Description!

Coordinates

chr2D:-:579584106..579588693

Molecular Weight (calculated)

66897.1 Da

IEP (calculated)

5.307

GRAVY (calculated)

-0.451

Length

598 amino acids

Sequence
(BLAST)

001: MASSKVCKER FDAAVTYLGA IGIQRETVSP VLTNLLELYD HNWEFIEADD FRVLTDAIFD EPDRKEEQQR QANKRKNLDS DHCKKKLKIK HHSRKPTSKV
101: RVNEKRELAE APLQQEAGPQ TVCATGNTLQ LSSSRLPIEE TGMEINVLKD TLTDEDSSAL SLQGQELPTF ETPLAVMCPP VQDSSHQRAY NDAHNKSIIE
201: LDYTYSEPRE SGMLQIVPAM DFLPKPSVPN QAGSSCMPPN NSMIHGGICP SSATAGEQSS SSNMLVIAKP KGPAHDVNDI TKGEEHVRIP IINEGGNGIL
301: PPPFHYIPRN ITFQNAYVSL SLARIGDDNC CSDCFGDCLA EPIPCACAAE TGGDFAYTRD GLLKEEFLNS CLSVLPKFYC KICSRERVKI VNSESPNAKV
401: NPCKGHPIRK FIKECWSKCG CARNCGNRVV QRGISRHLQV FLTPGEKGWG LRAAEELPWG AFICEYVGEI LTNNELYERN NQMVSNGKHT YPTLLDADWV
501: TEDVLEDDHA LCLDGTFYGN VARFINHRCS DANLIVIPVE IETPDHHYYH PAFFTTRQIK PFEELIWDYG LDFDDVNHPV EAFKCCCGSE FCQDKRNI

Best Arabidopsis Sequence Match ( AT3G04380.1 )
(BLAST)

001: MISLSGLTSS VESDLDMQQA MLTNKDEKVL KALERTRQLD IPDEKTMPVL MKLLEEAGGN WSYIKLDNYT ALVDAIYSVE DENKQSEGSS NGNRGKNLKV
101: IDSPATLKKT YETRSASSGS SIQVVQKQPQ LSNGDRKRKY KSRIADITKG SESVKIPLVD DVGSEAVPKF TYIPHNIVYQ SAYLHVSLAR ISDEDCCANC
201: KGNCLSADFP CTCARETSGE YAYTKEGLLK EKFLDTCLKM KKEPDSFPKV YCKDCPLERD HDKGTYGKCD GHLIRKFIKE CWRKCGCDMQ CGNRVVQRGI
301: RCQLQVYFTQ EGKGWGLRTL QDLPKGTFIC EYIGEILTNT ELYDRNVRSS SERHTYPVTL DADWGSEKDL KDEEALCLDA TICGNVARFI NHRCEDANMI
401: DIPIEIETPD RHYYHIAFFT LRDVKAMDEL TWDYMIDFND KSHPVKAFRC CCGSESCRDR KIKGSQGKSI ERRKIVSAKK QQGSKEVSKK RK

Arabidopsis Description

SUVR4Histone-lysine N-methyltransferase SUVR4 [Source:UniProtKB/Swiss-Prot;Acc:Q8W595]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.