Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G617700.1 | Wheat | nucleus | 61.38 | 58.15 |
| TraesCS7D01G189800.2 | Wheat | nucleus | 24.34 | 46.46 |
| HORVU7Hr1G038390.1 | Barley | mitochondrion, nucleus, plastid | 21.16 | 39.02 |
| Zm00001d050594_P001 | Maize | nucleus | 16.67 | 29.86 |
| KXG21281 | Sorghum | nucleus | 12.43 | 27.17 |
| TraesCS7D01G118600.1 | Wheat | nucleus | 18.25 | 25.18 |
| Zm00001d006791_P001 | Maize | nucleus | 10.05 | 24.84 |
| TraesCS7D01G108000.1 | Wheat | nucleus | 17.2 | 23.72 |
| Zm00001d024809_P001 | Maize | nucleus | 17.72 | 23.43 |
| Zm00001d010889_P001 | Maize | plastid | 14.81 | 23.24 |
| TraesCS7D01G108100.1 | Wheat | nucleus | 16.67 | 23.08 |
| KXG21283 | Sorghum | nucleus | 14.55 | 22.54 |
| EES18995 | Sorghum | nucleus | 15.87 | 21.74 |
| OQU77390 | Sorghum | nucleus | 14.02 | 21.72 |
| EES18996 | Sorghum | nucleus | 16.4 | 21.53 |
| TraesCS1D01G362000.1 | Wheat | nucleus | 16.67 | 20.72 |
| EER94504 | Sorghum | nucleus | 14.55 | 19.1 |
| TraesCS7D01G135700.1 | Wheat | nucleus | 21.43 | 18.62 |
| TraesCS7D01G135000.1 | Wheat | nucleus | 20.9 | 18.37 |
| EER89573 | Sorghum | nucleus | 15.34 | 18.35 |
| OQU76057 | Sorghum | nucleus | 14.81 | 18.24 |
| TraesCS7D01G135200.1 | Wheat | nucleus | 20.63 | 18.18 |
| TraesCS7D01G135500.1 | Wheat | nucleus | 19.05 | 17.96 |
| Zm00001d045162_P001 | Maize | nucleus | 13.76 | 17.93 |
| TraesCS7D01G135300.1 | Wheat | nucleus | 20.37 | 17.91 |
| EER88196 | Sorghum | nucleus | 14.55 | 17.41 |
| EER89299 | Sorghum | nucleus | 14.02 | 17.32 |
| EER88198 | Sorghum | nucleus | 14.55 | 17.3 |
| Solyc02g082380.1.1 | Tomato | nucleus | 9.79 | 16.67 |
| PGSC0003DMT400086891 | Potato | nucleus | 9.52 | 16.67 |
| EER89387 | Sorghum | nucleus | 13.49 | 16.04 |
| TraesCS7D01G135600.1 | Wheat | nucleus | 15.08 | 16.01 |
| OQU77389 | Sorghum | nucleus | 13.23 | 14.97 |
| Zm00001d024814_P001 | Maize | nucleus | 11.11 | 14.95 |
| KXG21280 | Sorghum | nucleus | 13.76 | 14.61 |
| KXG21278 | Sorghum | nucleus | 13.23 | 14.53 |
| Zm00001d024810_P001 | Maize | nucleus | 14.81 | 14.36 |
| Os06t0173800-00 | Rice | vacuole | 12.17 | 14.07 |
| EES18997 | Sorghum | nucleus | 13.76 | 13.83 |
| Solyc02g082390.1.1 | Tomato | nucleus | 10.05 | 13.52 |
| PGSC0003DMT400091980 | Potato | nucleus | 10.58 | 9.93 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR44191 | PANTHER:PTHR44191:SF3 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 |
| EnsemblPlantsGene:TraesCS2D01G567700 | EnsemblPlants:TraesCS2D01G567700.1 | TIGR:cd00167 | : | : | : |
Description
No Description!
Coordinates
chr2D:+:636010233..636018123
Molecular Weight (calculated)
43601.9 Da
IEP (calculated)
5.891
GRAVY (calculated)
-0.902
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MDARVSVEEA RSIITRFNNK GSSSDRANHN NHDNNPDTKL RMWYPSETMQ QDAMRVMEKG KGVIAVTEEN KVEALQNKMS TYEPVITLST RNDWAQEEHC
101: SLWSAVNERV SVQEPRSIIT WFNNKASSSD GANQNTYNKK PDTKLRMWYP CETMQQDVME KGKGVIAMTE ENKVEALENN MSTHQPVIAP SARNYSTQEE
201: HWSLWYAMNA RVGVEEAGSI ITGFNNKESS PVDENNSKYN NKPDTELRMQ YHCESMQQEG TRVMEESKDV IAMSEDNNVE VLENEMSIRQ PVIAPSARIY
301: WTKEEHWNFL DGLSFYGRGK WKEISKDFVT TKTPVQVSSH AHKYFKRLER KNLRRRYSIN DLGLEIAEPW IMGNSSSA
101: SLWSAVNERV SVQEPRSIIT WFNNKASSSD GANQNTYNKK PDTKLRMWYP CETMQQDVME KGKGVIAMTE ENKVEALENN MSTHQPVIAP SARNYSTQEE
201: HWSLWYAMNA RVGVEEAGSI ITGFNNKESS PVDENNSKYN NKPDTELRMQ YHCESMQQEG TRVMEESKDV IAMSEDNNVE VLENEMSIRQ PVIAPSARIY
301: WTKEEHWNFL DGLSFYGRGK WKEISKDFVT TKTPVQVSSH AHKYFKRLER KNLRRRYSIN DLGLEIAEPW IMGNSSSA
001: MTVEEVSDGS VWSREDDIAF ERALANNTDE SEERWEKIAA DVPGKSVEQI KEHYELLVED VTRIESGCVP LPAYGSPEGS NGHAGDEGAS SKKGGNSHAG
101: ESNQAGKSKS DQERRKGIAW TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVGNADV STPQGPITGQ
201: NNSNNNNNNN NNNSSPAVAG GGNKSAKQAV SQAPPGPPMY GTPAIGQPAV GTPVNLPAPP HMAYGVHAAP VPGSVVPGAA MNIGQMPYTM PRTPTAHR
101: ESNQAGKSKS DQERRKGIAW TEDEHRLFLL GLDKYGKGDW RSISRNFVVT RTPTQVASHA QKYFIRLNSM NKDRRRSSIH DITSVGNADV STPQGPITGQ
201: NNSNNNNNNN NNNSSPAVAG GGNKSAKQAV SQAPPGPPMY GTPAIGQPAV GTPVNLPAPP HMAYGVHAAP VPGSVVPGAA MNIGQMPYTM PRTPTAHR
Arabidopsis Description
SRM1Transcription factor SRM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNN6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.