Factsheet for TraesCS3A01G385200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G165100.1
TraesCS2B01G191300.1
TraesCS2D01G172200.1
TraesCS4A01G160900.1
TraesCS4B01G160100.1
TraesCS4D01G156000.1
TraesCS5A01G245400.1
TraesCS5B01G242900.1
TraesCS5D01G252200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	TraesCS2A01G165100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2B01G191300.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2D01G172200.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4A01G160900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4B01G160100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4D01G156000.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5A01G245400.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5B01G242900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5D01G252200.1	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G378200.1	Wheat	plastid	77.55	82.19
TraesCS3B01G417400.1	Wheat	nucleus	91.46	79.71
TraesCS4A01G023500.1	Wheat	nucleus	86.78	75.54
Os11t0602200-01	Rice	nucleus	79.89	71.34
EER96081	Sorghum	nucleus	77.14	67.47
EES10399	Sorghum	nucleus	75.34	66.79
Zm00001d019195_P001	Maize	nucleus	77.41	65.65
CDY04931	Canola	cytosol, extracellular, nucleus	5.51	52.63
Bra009408.1-P	Field mustard	nucleus	35.4	50.2
GSMUA_Achr5P27620_001	Banana	nucleus	41.46	48.71
KRH56252	Soybean	nucleus	13.64	46.48
TraesCS1A01G308300.1	Wheat	nucleus	43.11	46.44
TraesCS1A01G362000.1	Wheat	nucleus	42.84	46.01
AT2G05900.1	Thale cress	cytoskeleton, cytosol, nucleus	19.01	44.23
Bra028776.1-P	Field mustard	nucleus	36.91	42.2
CDY11319	Canola	nucleus	37.47	42.17
Bra005829.1-P	Field mustard	nucleus	37.33	42.02
TraesCS5A01G140500.1	Wheat	nucleus	39.26	41.79
CDX80930	Canola	nucleus	36.91	41.61
CDX96449	Canola	nucleus	37.47	41.4
TraesCS3A01G336100.1	Wheat	nucleus	42.29	41.21
AT5G04940.2	Thale cress	nucleus	38.02	41.19
CDX68245	Canola	nucleus	37.74	41.14
Bra009409.1-P	Field mustard	nucleus	37.6	41.05
KRH20576	Soybean	nucleus	38.02	41.01
CDY11129	Canola	nucleus	37.74	40.96
KRH13229	Soybean	nucleus	37.88	40.86
CDY61331	Canola	nucleus	37.6	40.81
AT1G73100.1	Thale cress	nucleus	37.33	40.51
CDY59935	Canola	nucleus	36.5	40.21
Bra016018.1-P	Field mustard	nucleus	37.33	40.03
CDX98805	Canola	nucleus	35.95	39.85
VIT_13s0047g00120.t01	Wine grape	nucleus	38.98	39.53
Solyc09g082050.2.1	Tomato	nucleus	35.12	39.41
KRH62706	Soybean	nucleus	35.95	39.13
CDX98804	Canola	nucleus	32.64	38.66
PGSC0003DMT400077329	Potato	nucleus	35.4	38.3
CDY14135	Canola	nucleus	37.05	37.26
VIT_08s0040g00360.t01	Wine grape	nucleus	37.33	36.77
KRH66648	Soybean	nucleus	34.85	35.73
PGSC0003DMT400018512	Potato	nucleus	34.57	34.96
CDY26218	Canola	nucleus	33.61	34.96
Solyc10g077070.1.1	Tomato	nucleus	34.3	34.87
TraesCS3A01G520700.1	Wheat	nucleus	13.64	34.38
AT1G17770.1	Thale cress	nucleus	32.37	33.91
CDY66122	Canola	nucleus	33.06	33.61
AT2G24740.1	Thale cress	nucleus	32.92	31.66
KRG95012	Soybean	plastid	21.07	31.35
CDY56214	Canola	nucleus	34.16	31.27
TraesCS3A01G457800.1	Wheat	mitochondrion, nucleus	21.49	29.38
TraesCS2A01G235400.1	Wheat	nucleus	26.58	28.81
TraesCS3A01G457900.1	Wheat	plastid	20.94	28.1
TraesCS1A01G042900.1	Wheat	nucleus	24.52	27.55
Bra004258.1-P	Field mustard	nucleus	34.85	27.53
Bra025949.1-P	Field mustard	nucleus	33.47	27.21
CDY26221	Canola	nucleus	33.33	27.04
CDX70182	Canola	nucleus	37.6	26.98
TraesCS3A01G441200.1	Wheat	nucleus	24.52	25.8
TraesCS4A01G100900.1	Wheat	nucleus	23.28	25.15
TraesCS3A01G295200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	10.74	23.49
TraesCS1A01G241600.2	Wheat	nucleus	24.38	21.61
TraesCS1A01G117300.1	Wheat	nucleus	26.03	19.96
TraesCS2A01G478800.1	Wheat	nucleus	14.74	17.83
TraesCS2A01G389600.1	Wheat	mitochondrion, nucleus	24.1	17.36
TraesCS5A01G194500.1	Wheat	plastid	26.72	16.74
TraesCS6A01G226600.1	Wheat	nucleus	15.56	16.59
TraesCS2A01G382000.5	Wheat	nucleus	14.05	15.07
TraesCS2A01G478000.1	Wheat	mitochondrion, nucleus	14.46	14.09
CDY01852	Canola	plasma membrane	35.4	13.85
TraesCS5A01G197900.1	Wheat	nucleus	18.04	13.21
TraesCS6A01G274600.1	Wheat	nucleus	14.19	6.31
CDX86631	Canola	cytosol	0.14	1.23
CDX89821	Canola	cytosol	0.14	1.23
CDY21127	Canola	cytosol	0.14	1.23
CDY53193	Canola	mitochondrion	0.14	0.71

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	InterPro:AT_hook_DNA-bd_motif
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214
InterPro:IPR003105	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987	PFAM:PF00856	PFAM:PF02182
PFAM:PF05033	PRINTS:PR00929	PFscan:PS50280	PFscan:PS50867	PFscan:PS51015	PFscan:PS51575
PANTHER:PTHR22884	PANTHER:PTHR22884:SF479	InterPro:PUA-like_sf	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317
SMART:SM00384	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199
SUPFAM:SSF88697	EnsemblPlantsGene:TraesCS3A01G385200	EnsemblPlants:TraesCS3A01G385200.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3A:-:634712107..634726046

Molecular Weight (calculated)

80210.2 Da

IEP (calculated)

8.305

GRAVY (calculated)

-0.562

Length

726 amino acids

Sequence
(BLAST)

001: MNGAANANGT SNNTMVSPVL QTPPAASTQE SGKKRGRPRR VQDTTVPTAP PVHLVPTAPH LVPSAPPEGN NIVLQTPPSA VTQESGKKKR GRSRRVPDVS
101: VVPTPSVPII DGKPIFQTPP ASSVHESVTK KRGRPKLVQD GSDTITPPVH SKESEPLMQT PPAVTLLEGG KRKRGRPKRV SDSSVTPSSY SEDVDSGDTS
201: KHGRPRKIDT SLPHLPSLSS DDPREYADNV LFMFDALRRR LMLLDEAKQV AKQQHNLKAG SIMMNAELRV NKSKKIGEVP GVEVGDMFYF RIEMCLVGLN
301: SQSMVGIDYI SAKFGKEEDP VAISVVAAGV YENTEDDPDV LVYTGHGMSG KDDQKLERGN LALERSLYRG NPIRVVCTVR DLTCSTGKIY IYDGLYKIRE
401: AWVEKGKSGF NVFKHKLLRE PGQPDGIAVW KKTEKWRENP SSRDRVILND ISYGVESKPV CLVNEVDDEK GPSHFIYTTK LNYVNSLSSM RKMQGCKCIS
501: VCLPGDNDCS CTHQNAGDIP YSASGTLVSR MPMLYECNDS CTCVHDCRNR VVQKGIQIHF EVFKTGDRGW GLRSWDPIRA GTFICEYAGE IIDKNAVDAE
601: DDYIFETPPS EQNVRWNYAP ELLGESSPSD LKEPSKQLPI VISAKRTGNI ARFMNHSCSP NVFSQPVLYD HGDEGYPHIA FYIPPMTELT YDYGQSQGNV
701: QLGNNSGCRR SKNCLCWSRK CRASFG

Best Arabidopsis Sequence Match ( AT2G24740.1 )
(BLAST)

001: MVSTPPTLLM LFDDGDAGPS TGLVHREKSD AVNEEAHATS VPPHAPPQTL WLLDNFNIED SYDRDAGPST GPVHRERSDA VNEEAHATSI PPHAPPQTLW
101: LLDNFNIEDS YDRDAGPSTS PIDREASHEV NEDAHATSAP PHVMVSPLQN RRPFDQFNNQ PYDASAGPST GPGKRGRGRP KGSKNGSRKP KKPKAYDNNS
201: TDASAGPSSG LGKRRCGRPK GLKNRSRKPK KPKADDPNSK MVISCPDFDS RITEAERESG NQEIVDSILM RFDAVRRRLC QLNYRKDKIL TASTNCMNLG
301: VRTNMTRRIG PIPGVQVGDI FYYWCEMCLV GLHRNTAGGI DSLLAKESGV DGPAATSVVT SGKYDNETED LETLIYSGHG GKPCDQVLQR GNRALEASVR
401: RRNEVRVIRG ELYNNEKVYI YDGLYLVSDC WQVTGKSGFK EYRFKLLRKP GQPPGYAIWK LVENLRNHEL IDPRQGFILG DLSFGEEGLR VPLVNEVDEE
501: DKTIPDDFDY IRSQCYSGMT NDVNVDSQSL VQSYIHQNCT CILKNCGQLP YHDNILVCRK PLIYECGGSC PTRMVETGLK LHLEVFKTSN CGWGLRSWDP
601: IRAGTFICEF TGVSKTKEEV EEDDDYLFDT SRIYHSFRWN YEPELLCEDA CEQVSEDANL PTQVLISAKE KGNVGRFMNH NCWPNVFWQP IEYDDNNGHI
701: YVRIGLFAMK HIPPMTELTY DYGISCVEKT GEDEVIYKGK KICLCGSVKC RGSFG

Arabidopsis Description

SUVH8Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.