Subcellular Localization
min:
: max
Winner_takes_all: golgi, unclear, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- nucleus 1
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| golgi:
25769308
unclear: 25769308 nucleus: 26228564 |
msms PMID:
25769308
doi
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G353000.1 | Wheat | mitochondrion | 100.0 | 100.0 |
| TraesCS3D01G347100.1 | Wheat | mitochondrion | 100.0 | 100.0 |
| TraesCS5B01G486700.1 | Wheat | mitochondrion | 100.0 | 100.0 |
| TraesCS4B01G054400.1 | Wheat | cytosol | 21.83 | 8.36 |
| Os10t0573100-01 | Rice | cytosol | 5.63 | 3.69 |
| TraesCS1B01G206200.1 | Wheat | mitochondrion, plastid | 11.97 | 3.68 |
Protein Annotations
| MapMan:17.1.3.1.24 | Gene3D:2.40.50.140 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0015935 | GO:GO:0019538 | InterPro:NA-bd_OB-fold |
| PFAM:PF00164 | PIRSF:PIRSF002133 | ScanProsite:PS00055 | PANTHER:PTHR11652 | PANTHER:PTHR11652:SF37 | InterPro:Ribosomal_S12/S23 |
| InterPro:Ribosomal_S23_euk/arc | SUPFAM:SSF50249 | TIGRFAMs:TIGR00982 | EnsemblPlantsGene:TraesCS3B01G385700 | EnsemblPlants:TraesCS3B01G385700.1 | TIGR:cd03367 |
Description
No Description!
Coordinates
chr3B:-:605676797..605678006
Molecular Weight (calculated)
15661.3 Da
IEP (calculated)
11.188
GRAVY (calculated)
-0.561
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKTRGMGAG RKLKTHRRNQ RWADKAYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLVKNGKKI AAFVPNDGCL NFIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
001: MGKTRGMGAG RKLKRLRINQ RWADKQYKKS HLGNEWKKPF AGSSHAKGIV LEKIGIEAKQ PNSAIRKCAR VQLIKNGKKI AAFVPNDGCL NYIEENDEVL
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
101: IAGFGRKGHA VGDIPGVRFK VVKVSGVSLL ALFKEKKEKP RS
Arabidopsis Description
RPS23B40S ribosomal protein S23-2 [Source:UniProtKB/Swiss-Prot;Acc:P49201]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.