Factsheet for TraesCS3B01G417400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G165100.1
TraesCS2B01G191300.1
TraesCS2D01G172200.1
TraesCS4A01G160900.1
TraesCS4B01G160100.1
TraesCS4D01G156000.1
TraesCS5A01G245400.1
TraesCS5B01G242900.1
TraesCS5D01G252200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	TraesCS2A01G165100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2B01G191300.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2D01G172200.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4A01G160900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4B01G160100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4D01G156000.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5A01G245400.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5B01G242900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5D01G252200.1	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G378200.1	Wheat	plastid	75.99	92.41
TraesCS3A01G385200.1	Wheat	plastid	79.71	91.46
TraesCS4B01G280000.1	Wheat	nucleus	74.79	85.93
Os11t0602200-01	Rice	nucleus	76.47	78.35
EER96081	Sorghum	nucleus	74.31	74.58
EES10399	Sorghum	nucleus	72.51	73.75
Zm00001d019195_P001	Maize	nucleus	74.55	72.55
GSMUA_Achr5P27620_001	Banana	nucleus	40.1	54.05
CDY04931	Canola	cytosol, extracellular, nucleus	4.8	52.63
TraesCS1B01G319000.1	Wheat	nucleus	41.42	51.19
TraesCS1B01G378900.1	Wheat	nucleus	41.18	50.89
Bra009408.1-P	Field mustard	nucleus	31.21	50.78
KRH56252	Soybean	nucleus	12.24	47.89
Bra005829.1-P	Field mustard	nucleus	35.77	46.2
CDY11319	Canola	nucleus	35.77	46.2
AT2G05900.1	Thale cress	cytoskeleton, cytosol, nucleus	17.17	45.83
Bra028776.1-P	Field mustard	nucleus	34.93	45.83
CDX80930	Canola	nucleus	35.17	45.5
TraesCS3B01G366900.1	Wheat	nucleus	40.46	45.36
TraesCS3B01G367200.1	Wheat	nucleus	40.46	45.36
TraesCS5B01G138800.1	Wheat	nucleus	38.66	45.35
AT5G04940.2	Thale cress	nucleus	36.01	44.78
Solyc09g082050.2.1	Tomato	nucleus	34.69	44.67
CDX96449	Canola	nucleus	35.17	44.6
Bra009409.1-P	Field mustard	nucleus	35.53	44.51
CDX68245	Canola	nucleus	35.41	44.29
VIT_13s0047g00120.t01	Wine grape	nucleus	37.94	44.13
CDY11129	Canola	nucleus	35.41	44.1
CDY61331	Canola	nucleus	35.29	43.95
CDX98805	Canola	nucleus	34.45	43.82
AT1G73100.1	Thale cress	nucleus	35.17	43.8
KRH20576	Soybean	nucleus	35.29	43.69
CDY59935	Canola	nucleus	34.45	43.55
KRH13229	Soybean	nucleus	35.05	43.39
PGSC0003DMT400077329	Potato	nucleus	34.81	43.22
Bra016018.1-P	Field mustard	nucleus	35.05	43.13
CDX98804	Canola	nucleus	31.09	42.25
KRH62706	Soybean	nucleus	33.73	42.13
CDY14135	Canola	nucleus	35.17	40.58
VIT_08s0040g00360.t01	Wine grape	nucleus	35.65	40.3
KRH66648	Soybean	nucleus	34.09	40.11
PGSC0003DMT400018512	Potato	nucleus	34.21	39.69
Solyc10g077070.1.1	Tomato	nucleus	33.97	39.64
CDY26218	Canola	nucleus	31.33	37.39
KRG95012	Soybean	plastid	21.85	37.3
AT1G17770.1	Thale cress	nucleus	30.61	36.8
CDY66122	Canola	nucleus	30.25	35.29
AT2G24740.1	Thale cress	nucleus	31.21	34.44
CDY56214	Canola	nucleus	32.17	33.8
TraesCS1B01G055800.1	Wheat	nucleus	23.05	29.95
TraesCS2B01G254700.1	Wheat	nucleus	23.89	29.57
Bra025949.1-P	Field mustard	nucleus	31.69	29.56
Bra004258.1-P	Field mustard	nucleus	32.41	29.38
CDY26221	Canola	nucleus	31.45	29.27
CDX70182	Canola	nucleus	35.53	29.25
TraesCS3B01G498000.1	Wheat	nucleus	21.25	27.53
TraesCS3B01G498100.1	Wheat	nucleus	20.77	27.5
TraesCS4B01G203900.1	Wheat	nucleus	21.97	27.03
TraesCS3B01G475200.1	Wheat	nucleus	20.77	26.33
TraesCS3B01G590300.1	Wheat	nucleus	19.33	25.64
TraesCS3B01G342100.1	Wheat	nucleus	9.72	24.4
TraesCS2B01G409600.1	Wheat	nucleus	21.25	18.4
TraesCS5B01G190000.1	Wheat	plastid	24.37	17.79
TraesCS2B01G503200.1	Wheat	nucleus	12.61	17.47
TraesCS6B01G255000.1	Wheat	nucleus	13.45	16.45
TraesCS1B01G137100.1	Wheat	nucleus, plastid	25.33	15.89
CDY01852	Canola	plasma membrane	33.73	15.14
TraesCS2B01G399300.4	Wheat	nucleus	12.24	15.07
TraesCS2B01G501300.2	Wheat	mitochondrion, nucleus	12.97	14.59
TraesCS2B01G616200.1	Wheat	nucleus	12.36	13.98
TraesCS5B01G185700.3	Wheat	nucleus	18.49	13.89
TraesCS6B01G302100.2	Wheat	nucleus	12.85	6.6
CDY21127	Canola	cytosol	0.12	1.23
CDX89821	Canola	cytosol	0.12	1.23
CDX86631	Canola	cytosol	0.12	1.23
CDY53193	Canola	mitochondrion	0.12	0.71

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	InterPro:AT_hook_DNA-bd_motif
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214
InterPro:IPR003105	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987	PFAM:PF00856	PFAM:PF02178
PFAM:PF02182	PFAM:PF05033	PRINTS:PR00929	PFscan:PS50280	PFscan:PS50867	PFscan:PS51015
PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF479	InterPro:PUA-like_sf	InterPro:Pre-SET_dom	InterPro:SET_dom
SMART:SM00317	SMART:SM00384	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG
SUPFAM:SSF82199	SUPFAM:SSF88697	EnsemblPlantsGene:TraesCS3B01G417400	EnsemblPlants:TraesCS3B01G417400.1	SEG:seg	:

Description

No Description!

Coordinates

chr3B:-:654355988..654358489

Molecular Weight (calculated)

91273.0 Da

IEP (calculated)

8.461

GRAVY (calculated)

-0.462

Length

833 amino acids

Sequence
(BLAST)

001: MAGNQQPTSV VLNDAAVIDA KPLRTLAPMF PAPLGMHTFT IKGSPAVLCV TPFGPYAGGT ELGMPGGVLP TSALLSAPAD PNPVQPYMVH MNGAANANGP
101: ADPNPVQPYM VHMNGAANAN GTTTVTPVLQ TPPAVSTQES GKKKRGRPRR VQDTTVPTAP PVHLVPSAPP EGNNIVLQTP PSAVTQESGK KKRGRPRHVP
201: DVSVVPTPSV PIVDGEPIFH TPPASSVHES VTKKRGRPKL VQDSSDTLTP PVHSKESEPL MQAPSAVTLL EDGKRKRGRP KRVPDSSVTP SSHSEDVDSG
301: DTSKRGRPRK IDTSLLHLPS LSSDDPRESA DNVLVMFDAL RRRLVQLDEA KQVAKQQHNL KAGSIMMNAE LRVNKSKKIG EVPGVAVGDM FYFRIEMCLV
401: GLNSQSMAGI DYMSAKFGNE EDPVAISVVS AGVYENTEDD LDVLVYTGHG MSGKDDQKLE RGNLALERSL YRGNPIRVVR TVRDLTCSTG KIYIYDGLYK
501: IREAWMEKGK SGFKVFKHKL LREPGQPDGI AVWKKTEKWR ENPSSRDHVI LNDISYGVES KPVCLVNEVD DEKGPSHFIY TTKLNYMNSL SSMKKMQGCR
601: CISVCLPGHN NCSCTHQNAG DLPYSASGTL VSRMPMLYEC NDSCTCVRDC RNRVVQIGIQ IHFEVFKTGD RGWGLRSWDP IRAGAFICEY AGEIFDKNVV
701: DAEDDYIFET PPLEQNVRWK YAPELLGEPS PSDLKEPSKQ LPIVISAKRT GNIARFMNHS CSPNVFWQPA LYDHGDEGYP HIAFFALKHI PPVTELTYDY
801: GQSQGNVQLG SNSGCRRSKK CLCWSRKCRA SFG

Best Arabidopsis Sequence Match ( AT2G24740.1 )
(BLAST)

001: MVSTPPTLLM LFDDGDAGPS TGLVHREKSD AVNEEAHATS VPPHAPPQTL WLLDNFNIED SYDRDAGPST GPVHRERSDA VNEEAHATSI PPHAPPQTLW
101: LLDNFNIEDS YDRDAGPSTS PIDREASHEV NEDAHATSAP PHVMVSPLQN RRPFDQFNNQ PYDASAGPST GPGKRGRGRP KGSKNGSRKP KKPKAYDNNS
201: TDASAGPSSG LGKRRCGRPK GLKNRSRKPK KPKADDPNSK MVISCPDFDS RITEAERESG NQEIVDSILM RFDAVRRRLC QLNYRKDKIL TASTNCMNLG
301: VRTNMTRRIG PIPGVQVGDI FYYWCEMCLV GLHRNTAGGI DSLLAKESGV DGPAATSVVT SGKYDNETED LETLIYSGHG GKPCDQVLQR GNRALEASVR
401: RRNEVRVIRG ELYNNEKVYI YDGLYLVSDC WQVTGKSGFK EYRFKLLRKP GQPPGYAIWK LVENLRNHEL IDPRQGFILG DLSFGEEGLR VPLVNEVDEE
501: DKTIPDDFDY IRSQCYSGMT NDVNVDSQSL VQSYIHQNCT CILKNCGQLP YHDNILVCRK PLIYECGGSC PTRMVETGLK LHLEVFKTSN CGWGLRSWDP
601: IRAGTFICEF TGVSKTKEEV EEDDDYLFDT SRIYHSFRWN YEPELLCEDA CEQVSEDANL PTQVLISAKE KGNVGRFMNH NCWPNVFWQP IEYDDNNGHI
701: YVRIGLFAMK HIPPMTELTY DYGISCVEKT GEDEVIYKGK KICLCGSVKC RGSFG

Arabidopsis Description

SUVH8Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH8 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.