Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G104900.1 | Wheat | endoplasmic reticulum, mitochondrion, plasma membrane | 98.42 | 98.42 |
| TraesCS3D01G107000.3 | Wheat | plasma membrane | 4.51 | 3.47 |
| TraesCS6D01G371500.2 | Wheat | plasma membrane | 1.69 | 2.03 |
| TraesCS2D01G362200.1 | Wheat | plasma membrane | 1.58 | 1.89 |
| TraesCS3D01G251400.2 | Wheat | plasma membrane | 2.14 | 1.62 |
| TraesCS6D01G135000.1 | Wheat | plasma membrane | 0.56 | 1.05 |
| TraesCS1D01G249000.1 | Wheat | plasma membrane | 0.56 | 1.05 |
| TraesCS3D01G178300.1 | Wheat | plasma membrane | 0.68 | 0.81 |
| TraesCS1D01G129100.1 | Wheat | plasma membrane | 0.34 | 0.72 |
| TraesCS7D01G500300.1 | Wheat | plasma membrane | 0.34 | 0.66 |
| CDX95260 | Canola | cytosol | 0.0 | 0.0 |
| KRH44150 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G107100.1 | EnsemblPlantsGene:TraesCS3D01G107100 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008270 | InterPro:DYW_dom | InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf |
| PANTHER:PTHR24015 | PANTHER:PTHR24015:SF128 | PFAM:PF01535 | PFAM:PF13041 | PFAM:PF13812 | PFAM:PF14432 |
| PFscan:PS51375 | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr3D:+:59294096..59296759
Molecular Weight (calculated)
98213.2 Da
IEP (calculated)
7.534
GRAVY (calculated)
0.009
Length
887 amino acids
Sequence
(BLAST)
(BLAST)
001: MLFNLPRVTT PIAVRWFISV ANAAGFGRDV SPVHFAALLK ECRSVNAVHQ VHQQLISSGL LSYPASLLEV SFPPLPSQPY LSPRSLGTGV VAAYLACGSK
101: DEALTALEHV VPSPAVWWNL LIREHIKEGH LEHAIAVSCR MLRAGTRPDH FTLPHILKAC GELPSYRCGI TLHGLICCNG FESNVFVCNA LVAMYARCGS
201: LKEASQVFQE IAQRGIDDVI SWNSIVAAHV KHNSPWTALD MFSKMSMIVH EKATNDRSNI ISIVNILPAC ASLKALPRTR EIHGNAIRHG TFPDVFVGNA
301: LVGTYAKCGS MKDAVKVFNM MEIKDVVSWN AIVTGYSQSG NFEAAFEIFK NMRKENISAD VVTWTAVIAG YAQRGCGQEA LNVFRQMLFS GSEPNSITII
401: SVLSACASLG AYSQGMETHA YSLKNRLLSL DNHFGGTGDE EDLMVHNALI DMYSKCRIFK AARSIFDSIP RKERNVVTWT VMIGGYAQYG DSNDALELFS
501: QMLSKPHAVA PNAFTVSCIL MACAHLSALR VGKQIHAYVV RQHQYEASTY FVANCLIDMY SKCGDVDTAR YVFDGMSQRN DISWTSMMAG YGMHGRGNEA
601: LEIFDKMQMA GFVPDDISFL VVLYACSHSR MIDRGLDYFD SMSRDYGVAA GAEHYACVID LLARSGQIDR AWNMVKDMPM EPTAVVWVAL LSACRVHSNV
701: ELAEYALNKL VEMNAENDGS YTLISNIYAN ARRWKDVARI RNLMKNSGIK KRPGCSWVQG KKGTASFFVG DRSHSLSPQI YALLERLIDR IKSMGYVPET
801: NFALHDVDDE EKNNLLAEHS EKLALAYGLL TTSPGCPIRI TKNLRVCGDC HSAFTYISKI VDHEIIVRDS SRFHHFKNGV CSCGDYW
101: DEALTALEHV VPSPAVWWNL LIREHIKEGH LEHAIAVSCR MLRAGTRPDH FTLPHILKAC GELPSYRCGI TLHGLICCNG FESNVFVCNA LVAMYARCGS
201: LKEASQVFQE IAQRGIDDVI SWNSIVAAHV KHNSPWTALD MFSKMSMIVH EKATNDRSNI ISIVNILPAC ASLKALPRTR EIHGNAIRHG TFPDVFVGNA
301: LVGTYAKCGS MKDAVKVFNM MEIKDVVSWN AIVTGYSQSG NFEAAFEIFK NMRKENISAD VVTWTAVIAG YAQRGCGQEA LNVFRQMLFS GSEPNSITII
401: SVLSACASLG AYSQGMETHA YSLKNRLLSL DNHFGGTGDE EDLMVHNALI DMYSKCRIFK AARSIFDSIP RKERNVVTWT VMIGGYAQYG DSNDALELFS
501: QMLSKPHAVA PNAFTVSCIL MACAHLSALR VGKQIHAYVV RQHQYEASTY FVANCLIDMY SKCGDVDTAR YVFDGMSQRN DISWTSMMAG YGMHGRGNEA
601: LEIFDKMQMA GFVPDDISFL VVLYACSHSR MIDRGLDYFD SMSRDYGVAA GAEHYACVID LLARSGQIDR AWNMVKDMPM EPTAVVWVAL LSACRVHSNV
701: ELAEYALNKL VEMNAENDGS YTLISNIYAN ARRWKDVARI RNLMKNSGIK KRPGCSWVQG KKGTASFFVG DRSHSLSPQI YALLERLIDR IKSMGYVPET
801: NFALHDVDDE EKNNLLAEHS EKLALAYGLL TTSPGCPIRI TKNLRVCGDC HSAFTYISKI VDHEIIVRDS SRFHHFKNGV CSCGDYW
001: MIRRLLIPNA AAKSHQYIKV SLFSTSAPEI TPPFIHKCKT ISQVKLIHQK LLSFGILTLN LTSHLISTYI SVGCLSHAVS LLRRFPPSDA GVYHWNSLIR
101: SYGDNGCANK CLYLFGLMHS LSWTPDNYTF PFVFKACGEI SSVRCGESAH ALSLVTGFIS NVFVGNALVA MYSRCRSLSD ARKVFDEMSV WDVVSWNSII
201: ESYAKLGKPK VALEMFSRMT NEFGCRPDNI TLVNVLPPCA SLGTHSLGKQ LHCFAVTSEM IQNMFVGNCL VDMYAKCGMM DEANTVFSNM SVKDVVSWNA
301: MVAGYSQIGR FEDAVRLFEK MQEEKIKMDV VTWSAAISGY AQRGLGYEAL GVCRQMLSSG IKPNEVTLIS VLSGCASVGA LMHGKEIHCY AIKYPIDLRK
401: NGHGDENMVI NQLIDMYAKC KKVDTARAMF DSLSPKERDV VTWTVMIGGY SQHGDANKAL ELLSEMFEED CQTRPNAFTI SCALVACASL AALRIGKQIH
501: AYALRNQQNA VPLFVSNCLI DMYAKCGSIS DARLVFDNMM AKNEVTWTSL MTGYGMHGYG EEALGIFDEM RRIGFKLDGV TLLVVLYACS HSGMIDQGME
601: YFNRMKTVFG VSPGPEHYAC LVDLLGRAGR LNAALRLIEE MPMEPPPVVW VAFLSCCRIH GKVELGEYAA EKITELASNH DGSYTLLSNL YANAGRWKDV
701: TRIRSLMRHK GVKKRPGCSW VEGIKGTTTF FVGDKTHPHA KEIYQVLLDH MQRIKDIGYV PETGFALHDV DDEEKDDLLF EHSEKLALAY GILTTPQGAA
801: IRITKNLRVC GDCHTAFTYM SRIIDHDIIL RDSSRFHHFK NGSCSCKGYW
101: SYGDNGCANK CLYLFGLMHS LSWTPDNYTF PFVFKACGEI SSVRCGESAH ALSLVTGFIS NVFVGNALVA MYSRCRSLSD ARKVFDEMSV WDVVSWNSII
201: ESYAKLGKPK VALEMFSRMT NEFGCRPDNI TLVNVLPPCA SLGTHSLGKQ LHCFAVTSEM IQNMFVGNCL VDMYAKCGMM DEANTVFSNM SVKDVVSWNA
301: MVAGYSQIGR FEDAVRLFEK MQEEKIKMDV VTWSAAISGY AQRGLGYEAL GVCRQMLSSG IKPNEVTLIS VLSGCASVGA LMHGKEIHCY AIKYPIDLRK
401: NGHGDENMVI NQLIDMYAKC KKVDTARAMF DSLSPKERDV VTWTVMIGGY SQHGDANKAL ELLSEMFEED CQTRPNAFTI SCALVACASL AALRIGKQIH
501: AYALRNQQNA VPLFVSNCLI DMYAKCGSIS DARLVFDNMM AKNEVTWTSL MTGYGMHGYG EEALGIFDEM RRIGFKLDGV TLLVVLYACS HSGMIDQGME
601: YFNRMKTVFG VSPGPEHYAC LVDLLGRAGR LNAALRLIEE MPMEPPPVVW VAFLSCCRIH GKVELGEYAA EKITELASNH DGSYTLLSNL YANAGRWKDV
701: TRIRSLMRHK GVKKRPGCSW VEGIKGTTTF FVGDKTHPHA KEIYQVLLDH MQRIKDIGYV PETGFALHDV DDEEKDDLLF EHSEKLALAY GILTTPQGAA
801: IRITKNLRVC GDCHTAFTYM SRIIDHDIIL RDSSRFHHFK NGSCSCKGYW
Arabidopsis Description
PCMP-H92Pentatricopeptide repeat-containing protein At5g16860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFL5]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.