Factsheet for TraesCS3D01G378200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G165100.1
TraesCS2B01G191300.1
TraesCS2D01G172200.1
TraesCS4A01G160900.1
TraesCS4B01G160100.1
TraesCS4D01G156000.1
TraesCS5A01G245400.1
TraesCS5B01G242900.1
TraesCS5D01G252200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	TraesCS2A01G165100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2B01G191300.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2D01G172200.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4A01G160900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4B01G160100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4D01G156000.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5A01G245400.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5B01G242900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5D01G252200.1	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G385200.1	Wheat	plastid	82.19	77.55
TraesCS3B01G417400.1	Wheat	nucleus	92.41	75.99
TraesCS4D01G278500.1	Wheat	nucleus	87.3	73.02
Os11t0602200-01	Rice	nucleus	76.79	64.7
EER96081	Sorghum	nucleus	76.06	62.77
EES10399	Sorghum	nucleus	72.41	60.56
Zm00001d019195_P001	Maize	nucleus	75.18	60.16
GSMUA_Achr5P27620_001	Banana	nucleus	42.92	47.57
TraesCS1D01G307700.1	Wheat	nucleus	38.83	39.47
TraesCS1D01G366800.1	Wheat	nucleus	38.83	39.35
Bra009408.1-P	Field mustard	nucleus	28.47	38.09
KRG95012	Soybean	plastid	26.86	37.7
CDY11319	Canola	nucleus	34.16	36.28
Bra005829.1-P	Field mustard	nucleus	34.16	36.28
Bra028776.1-P	Field mustard	nucleus	33.28	35.91
Bra009409.1-P	Field mustard	nucleus	34.74	35.79
TraesCS5D01G152000.1	Wheat	nucleus	35.77	35.61
CDX80930	Canola	nucleus	33.43	35.56
Solyc09g082050.2.1	Tomato	nucleus	33.43	35.39
CDX96449	Canola	nucleus	33.87	35.31
TraesCS3D01G329100.1	Wheat	nucleus	38.25	35.26
AT5G04940.2	Thale cress	nucleus	34.45	35.22
CDX68245	Canola	nucleus	33.87	34.83
CDY11129	Canola	nucleus	33.87	34.68
CDY61331	Canola	nucleus	33.87	34.68
CDY59935	Canola	nucleus	33.28	34.6
PGSC0003DMT400077329	Potato	nucleus	33.72	34.43
VIT_13s0047g00120.t01	Wine grape	nucleus	35.91	34.36
Bra016018.1-P	Field mustard	nucleus	33.87	34.27
AT1G73100.1	Thale cress	nucleus	33.43	34.23
CDX98805	Canola	nucleus	32.55	34.05
KRH20576	Soybean	nucleus	32.85	33.43
CDX98804	Canola	nucleus	29.78	33.28
KRH13229	Soybean	nucleus	32.41	32.99
KRH66648	Soybean	nucleus	33.43	32.34
CDY14135	Canola	nucleus	33.72	31.99
KRH62706	Soybean	nucleus	30.95	31.78
VIT_08s0040g00360.t01	Wine grape	nucleus	34.16	31.75
Solyc10g077070.1.1	Tomato	nucleus	32.85	31.51
PGSC0003DMT400018512	Potato	nucleus	32.99	31.48
AT2G05900.1	Thale cress	cytoskeleton, cytosol, nucleus	13.58	29.81
CDY26218	Canola	nucleus	29.2	28.65
CDY66122	Canola	nucleus	28.32	27.17
AT1G17770.1	Thale cress	nucleus	26.86	26.55
CDY56214	Canola	nucleus	29.93	25.85
AT2G24740.1	Thale cress	nucleus	27.3	24.77
TraesCS1D01G043400.1	Wheat	nucleus	22.92	24.53
TraesCS2D01G240000.1	Wheat	nucleus	23.94	24.3
CDX70182	Canola	nucleus	34.74	23.52
Bra025949.1-P	Field mustard	nucleus	30.07	23.07
CDY26221	Canola	nucleus	29.93	22.91
Bra004258.1-P	Field mustard	nucleus	30.51	22.74
TraesCS3D01G433900.1	Wheat	nucleus	22.34	22.17
TraesCS4D01G204500.1	Wheat	nucleus	21.75	21.94
TraesCS3D01G450600.1	Wheat	nucleus	21.61	21.8
TraesCS3D01G450700.1	Wheat	nucleus	21.31	20.89
TraesCS1D01G241500.1	Wheat	nucleus	22.34	18.68
KRH56252	Soybean	nucleus	5.4	17.37
TraesCS3D01G307900.1	Wheat	nucleus	7.3	15.06
TraesCS5D01G197700.2	Wheat	plastid	22.92	13.84
TraesCS2D01G389100.1	Wheat	nucleus	19.27	13.75
TraesCS1D01G118300.1	Wheat	nucleus, plastid	22.92	12.83
TraesCS2D01G478100.1	Wheat	nucleus	10.37	11.87
CDY01852	Canola	plasma membrane	32.12	11.85
TraesCS6D01G208400.1	Wheat	nucleus	10.95	11.01
TraesCS2D01G378500.3	Wheat	nucleus	10.51	10.62
TraesCS2D01G477200.1	Wheat	mitochondrion, nucleus	11.09	10.3
TraesCS2D01G566400.1	Wheat	nucleus	9.78	9.09
TraesCS5D01G193000.2	Wheat	nucleus	14.89	9.08
TraesCS6D01G254900.2	Wheat	nucleus	11.39	4.83
CDX86631	Canola	cytosol	0.0	0.0
TraesCS5D01G192900.1	Wheat	cytosol	0.0	0.0
CDX89821	Canola	cytosol	0.0	0.0
CDY04931	Canola	cytosol, extracellular, nucleus	0.0	0.0
CDY21127	Canola	cytosol	0.0	0.0
CDY53193	Canola	mitochondrion	0.0	0.0

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	InterPro:AT_hook_DNA-bd_motif
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571	GO:GO:0016740
GO:GO:0018024	GO:GO:0019538	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR003105	InterPro:IPR007728
InterPro:IPR025794	InterPro:IPR036987	PFAM:PF02182	PFAM:PF05033	PRINTS:PR00929	PFscan:PS50867
PFscan:PS51015	PFscan:PS51575	PANTHER:PTHR22884	PANTHER:PTHR22884:SF479	InterPro:PUA-like_sf	InterPro:Pre-SET_dom
SMART:SM00384	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199
SUPFAM:SSF88697	EnsemblPlantsGene:TraesCS3D01G378200	EnsemblPlants:TraesCS3D01G378200.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:-:495320948..495323428

Molecular Weight (calculated)

74761.4 Da

IEP (calculated)

8.411

GRAVY (calculated)

-0.446

Length

685 amino acids

Sequence
(BLAST)

001: MAGNQQPASV VLNDAAVLDA KPLRTLTPMF PAPLGMHTFT IKGSPPVVCV TPFRPYAGGT ELGVPGDVLP TSAALSAPAD PNPVQPYMVH MNGAANANGT
101: SNNTMVSPVL QTPPAVSTQE SGKKKRGTPR RVQDTTVPTA PAVHLVPMAP PVHLVPSVPS APPEGNNTVL QTPPSAVTQE SGKKKRGRPR RVPDVSVVPT
201: PSVPIVDGEP IFQTPPASSV HESVTKIRGR PKLVQDSSDT LTPPVHSKES EPLMQTPSAV TLLEDGKRKR GQPKRVPDSS VTPSSHSEDV DSGDTSKRGR
301: PRKIDTSLLH LPSLSSDDPR EYADNVLFMF DALRRRLIQL DEAKQVAKQQ HNLKAGSIMM NAELRVNKSK KIGEVPGVEV GDMFYFRIEM CLVGLNSQSM
401: AGIDYMSAKF GKEEDPVAIS VVAAGVYENT EDDPDVLVYT GHGMSGKDDQ KLERGNLALE RSLYRGNPIR VVRTVRDLTC STGKIYIYDG LYKIREAWVE
501: KGKSGFNVFK HKLLREPGQP DGIAVWKKTE KWRENPSSRD RVILNDISYG VESKPVCLVN EVDDEKGPSH FIYTTKLNYM NSLSSMRKMQ GCKCISVCLP
601: GDNDCSCTHQ NAGDLPYSAS GTLVSRMPML YECNDSCTCV HDCRNRVVQQ GIQIHFEVFK TGDRGWGLRS WDPIRAGTFI CEYAG

Best Arabidopsis Sequence Match ( AT1G73100.1 )
(BLAST)

001: MQGVPGFNTV PNPNHYDKSI VLDIKPLRSL KPVFPNGNQG PPFVGCPPFG PSSSEYSSFF PFGAQQPTHD TPDLNQTQNT PIPSFVPPLR SYRTPTKTNG
101: PSSSSGTKRG VGRPKGTTSV KKKEKKTVAN EPNLDVQVVK KFSSDFDSGI SAAEREDGNA YLVSSVLMRF DAVRRRLSQV EFTKSATSKA AGTLMSNGVR
201: TNMKKRVGTV PGIEVGDIFF SRIEMCLVGL HMQTMAGIDY IISKAGSDEE SLATSIVSSG RYEGEAQDPE SLIYSGQGGN ADKNRQASDQ KLERGNLALE
301: NSLRKGNGVR VVRGEEDAAS KTGKIYIYDG LYSISESWVE KGKSGCNTFK YKLVRQPGQP PAFGFWKSVQ KWKEGLTTRP GLILPDLTSG AESKPVSLVN
401: DVDEDKGPAY FTYTSSLKYS ETFKLTQPVI GCSCSGSCSP GNHNCSCIRK NDGDLPYLNG VILVSRRPVI YECGPTCPCH ASCKNRVIQT GLKSRLEVFK
501: TRNRGWGLRS WDSLRAGSFI CEYAGEVKDN GNLRGNQEED AYVFDTSRVF NSFKWNYEPE LVDEDPSTEV PEEFNLPSPL LISAKKFGNV ARFMNHSCSP
601: NVFWQPVIRE GNGESVIHIA FFAMRHIPPM AELTYDYGIS PTSEARDESL LHGQRTCLCG SEQCRGSFG

Arabidopsis Description

SUVH3Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.