Factsheet for TraesCS4A01G160900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G160100.1	Wheat	cytosol	92.25	92.02
TraesCS4D01G156000.1	Wheat	nucleus	90.5	90.27
HORVU4Hr1G039650.1	Barley	nucleus	89.25	89.7
Os03t0392400-01	Rice	nucleus	69.75	68.89
EER92178	Sorghum	nucleus	68.0	67.49
Zm00001d047214_P001	Maize	extracellular	66.75	67.25
Zm00001d029409_P001	Maize	nucleus, peroxisome, plastid	64.75	65.4
TraesCS2A01G165100.1	Wheat	cytosol	46.75	47.83
GSMUA_Achr10P...	Banana	cytosol	41.25	39.19
GSMUA_Achr1P21390_001	Banana	cytosol	39.25	38.96
GSMUA_Achr3P06790_001	Banana	cytosol	29.25	36.0
TraesCS1A01G141000.1	Wheat	plastid	16.25	32.02
AT5G09540.1	Thale cress	nucleus	21.75	31.07
CDY69792	Canola	cytosol	22.75	31.06
Bra009389.1-P	Field mustard	cytosol	22.75	31.06
CDY21586	Canola	cytosol	21.5	29.76
CDY31322	Canola	cytosol	25.75	27.61
Bra031921.1-P	Field mustard	cytosol	25.0	27.1
Solyc07g007230.2.1	Tomato	nucleus	26.25	24.65
VIT_03s0017g00300.t01	Wine grape	nucleus	29.0	23.87
AT5G64360.7	Thale cress	nucleus	27.25	23.49
KRH49811	Soybean	nucleus	27.5	23.35
KRH42098	Soybean	nucleus	26.5	23.3
Bra024289.1-P	Field mustard	nucleus	26.0	22.66
KRH10601	Soybean	nucleus	27.5	22.13
KRH21766	Soybean	nucleus	27.25	21.84
CDX84519	Canola	nucleus	25.75	21.68
CDY58269	Canola	nucleus	26.5	21.12
PGSC0003DMT400079004	Potato	cytosol	26.25	20.55
TraesCS5A01G245400.1	Wheat	cytosol, nucleus, plastid	25.75	19.51
CDY46799	Canola	nucleus	19.0	19.39
Solyc11g006170.1.1	Tomato	nucleus	27.0	16.64
PGSC0003DMT400073845	Potato	cytosol	26.25	16.1
Solyc11g006140.1.1	Tomato	nucleus	23.5	15.8
Solyc01g105780.2.1	Tomato	nucleus	28.25	15.76
PGSC0003DMT400083794	Potato	nucleus	28.5	15.34
CDY45966	Canola	nucleus	23.0	12.37
Bra027007.1-P	Field mustard	nucleus	22.75	12.2
CDY45473	Canola	nucleus	22.75	12.17
AT1G62970.1	Thale cress	nucleus	22.75	11.42

Protein Annotations

EnsemblPlants:TraesCS4A01G160900.1	EnsemblPlantsGene:TraesCS4A01G160900	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR45496	PFscan:PS50076	SEG:seg	SMART:SM00271	SUPFAM:SSF46565
TIGR:cd06257	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr4A:+:347400609..347401811

Molecular Weight (calculated)

42352.7 Da

IEP (calculated)

6.115

GRAVY (calculated)

-0.363

Length

400 amino acids

Sequence
(BLAST)

001: MNFSVGAGGS GDGGGEGGRV QAERWLEIAA KLLAARDIVG CKRFAERAVE ADPLLPGADE LLAVADVLLA SQVMLYTGEP DPFAVLQVPS KTTDHGAISR
101: AFRRLALLLQ SSNPHPGADV ALRIVNDAYE LLSDPSRRPL RSAPTNIPSG APSQPAAAAA PEAEAADFWT ACPFCCYVHQ YPRELVGRAL KCPNESCRRG
201: FVAVEIPTQP TIVPGTEMYH CAWGFFPLGF PNSADLGGNW KPFYKVFPWN NAPSGGGAIG RNYSNHGGGS NDRQPQNGSA RGGSSRGRVK KTTARKKVGA
301: GPKRRSFGGG VESGIDASML GHDGWAEGEE GEGGQREEVR GININEEAQA TDGTGRANVT GVEDLGSFHL DVDPTEDILG NLGNLHNLPF LRVDNLGRML

Best Arabidopsis Sequence Match ( AT2G01710.1 )
(BLAST)

001: MGDNNPNRSE AERLLGIAEK LLESRDLNGS KEFAILAQET EPLLEGTDQI LAVVDVLLSS APENRIKNQP NWYKILQIED LTESSTDNDL IKKQYRRLAL
101: LLHPDKNRFP FADQAFRFVL DAWEVLSTPT KKSQFDGDLN LIFTKVNLNT QKSKKKTTTN EKMSTFWTAC PYCYSLHEYP RVYQEYCIRC QNCQRAFHAA
201: SIPQLPPLIP GKDEYYCCWG FFPMGFVGGK GGEAAIANGV DAAKFPNWMP PVFSSGGVAA PPSGNGVSFD GWSGGAAKRD NEAVRSNNGV GVNSDGTPKK
301: RGRGRPKKNP V

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:TAIR;Acc:AT2G01710]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.