Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G156000.1 | Wheat | nucleus | 95.51 | 95.51 |
| HORVU4Hr1G039650.1 | Barley | nucleus | 92.27 | 92.96 |
| TraesCS4A01G160900.1 | Wheat | cytosol | 92.02 | 92.25 |
| Os03t0392400-01 | Rice | nucleus | 67.58 | 66.91 |
| Zm00001d047214_P001 | Maize | extracellular | 65.09 | 65.74 |
| EER92178 | Sorghum | nucleus | 65.59 | 65.26 |
| Zm00001d029409_P001 | Maize | nucleus, peroxisome, plastid | 63.84 | 64.65 |
| TraesCS2B01G191300.1 | Wheat | cytosol | 47.38 | 48.47 |
| GSMUA_Achr10P... | Banana | cytosol | 40.9 | 38.95 |
| GSMUA_Achr1P21390_001 | Banana | cytosol | 38.15 | 37.97 |
| GSMUA_Achr3P06790_001 | Banana | cytosol | 28.93 | 35.69 |
| AT5G09540.1 | Thale cress | nucleus | 21.7 | 31.07 |
| CDY69792 | Canola | cytosol | 22.19 | 30.38 |
| Bra009389.1-P | Field mustard | cytosol | 22.19 | 30.38 |
| CDY21586 | Canola | cytosol | 20.95 | 29.07 |
| CDY31322 | Canola | cytosol | 25.94 | 27.88 |
| Bra031921.1-P | Field mustard | cytosol | 25.44 | 27.64 |
| Solyc07g007230.2.1 | Tomato | nucleus | 26.68 | 25.12 |
| VIT_03s0017g00300.t01 | Wine grape | nucleus | 29.68 | 24.49 |
| KRH49811 | Soybean | nucleus | 28.18 | 23.99 |
| KRH42098 | Soybean | nucleus | 27.18 | 23.96 |
| AT5G64360.7 | Thale cress | nucleus | 27.68 | 23.92 |
| Bra024289.1-P | Field mustard | nucleus | 26.68 | 23.31 |
| CDX84519 | Canola | nucleus | 26.43 | 22.32 |
| KRH10601 | Soybean | nucleus | 27.43 | 22.13 |
| KRH21766 | Soybean | nucleus | 27.18 | 21.84 |
| CDY58269 | Canola | nucleus | 27.18 | 21.71 |
| TraesCS5B01G242900.1 | Wheat | cytosol | 27.68 | 21.06 |
| PGSC0003DMT400079004 | Potato | cytosol | 26.68 | 20.94 |
| CDY46799 | Canola | nucleus | 18.95 | 19.39 |
| Solyc11g006170.1.1 | Tomato | nucleus | 27.18 | 16.8 |
| PGSC0003DMT400073845 | Potato | cytosol | 26.43 | 16.26 |
| Solyc01g105780.2.1 | Tomato | nucleus | 28.43 | 15.9 |
| Solyc11g006140.1.1 | Tomato | nucleus | 23.19 | 15.63 |
| PGSC0003DMT400083794 | Potato | nucleus | 28.68 | 15.48 |
| CDY45966 | Canola | nucleus | 23.19 | 12.5 |
| Bra027007.1-P | Field mustard | nucleus | 22.94 | 12.33 |
| CDY45473 | Canola | nucleus | 22.94 | 12.3 |
| AT1G62970.1 | Thale cress | nucleus | 22.69 | 11.42 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G160100.1 | EnsemblPlantsGene:TraesCS4B01G160100 | Gene3D:1.10.287.110 | InterPro:DnaJ_domain | InterPro:IPR001623 | InterPro:IPR036869 |
| InterPro:J_dom_sf | PANTHER:PTHR45496 | PFscan:PS50076 | SEG:seg | SMART:SM00271 | SUPFAM:SSF46565 |
| TIGR:cd06257 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:312078615..312080185
Molecular Weight (calculated)
42503.9 Da
IEP (calculated)
6.266
GRAVY (calculated)
-0.380
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFSVGAGGS GDGGGEGGRV QAERWLEIAA KLLAARDLVG CKRFAERAVE ADPLLPGADE LLAVADVLLT SQAMLYTGEP DPFAVLQVPS KTTDHGAISR
101: AFRRLALLLQ SSNPHPGADV ALRIVNDAYE LLSDPSRQPL RSARTNIPSG APSQPAAAAA PAAEATDFWT ACPFCCYVHQ YPRELVGRAL KCPNESCRRG
201: FVAVEIPTQP TIVPGTEMYH CAWGFFPLGF PNSADLGGNW KPFYKVFPWN NAPSGGGAIG RNYSNYGGGS NGRQPQNGSA RGGSSRGRVK KTTARKKVGT
301: GPKRRSFGGG VESGIDASML GQDGWAEGEE GEGGQREEVR EININEEARA TDGTGRANVT GGVEDLGSFH LDVDPTEDIL GNLGNLHNLP FLRVDNLGRM
401: L
101: AFRRLALLLQ SSNPHPGADV ALRIVNDAYE LLSDPSRQPL RSARTNIPSG APSQPAAAAA PAAEATDFWT ACPFCCYVHQ YPRELVGRAL KCPNESCRRG
201: FVAVEIPTQP TIVPGTEMYH CAWGFFPLGF PNSADLGGNW KPFYKVFPWN NAPSGGGAIG RNYSNYGGGS NGRQPQNGSA RGGSSRGRVK KTTARKKVGT
301: GPKRRSFGGG VESGIDASML GQDGWAEGEE GEGGQREEVR EININEEARA TDGTGRANVT GGVEDLGSFH LDVDPTEDIL GNLGNLHNLP FLRVDNLGRM
401: L
001: MGDNNPNRSE AERLLGIAEK LLESRDLNGS KEFAILAQET EPLLEGTDQI LAVVDVLLSS APENRIKNQP NWYKILQIED LTESSTDNDL IKKQYRRLAL
101: LLHPDKNRFP FADQAFRFVL DAWEVLSTPT KKSQFDGDLN LIFTKVNLNT QKSKKKTTTN EKMSTFWTAC PYCYSLHEYP RVYQEYCIRC QNCQRAFHAA
201: SIPQLPPLIP GKDEYYCCWG FFPMGFVGGK GGEAAIANGV DAAKFPNWMP PVFSSGGVAA PPSGNGVSFD GWSGGAAKRD NEAVRSNNGV GVNSDGTPKK
301: RGRGRPKKNP V
101: LLHPDKNRFP FADQAFRFVL DAWEVLSTPT KKSQFDGDLN LIFTKVNLNT QKSKKKTTTN EKMSTFWTAC PYCYSLHEYP RVYQEYCIRC QNCQRAFHAA
201: SIPQLPPLIP GKDEYYCCWG FFPMGFVGGK GGEAAIANGV DAAKFPNWMP PVFSSGGVAA PPSGNGVSFD GWSGGAAKRD NEAVRSNNGV GVNSDGTPKK
301: RGRGRPKKNP V
Arabidopsis Description
Chaperone DnaJ-domain superfamily protein [Source:TAIR;Acc:AT2G01710]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.