Factsheet for TraesCS4B01G280000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G165100.1
TraesCS2B01G191300.1
TraesCS2D01G172200.1
TraesCS4A01G160900.1
TraesCS4B01G160100.1
TraesCS4D01G156000.1
TraesCS5A01G245400.1
TraesCS5B01G242900.1
TraesCS5D01G252200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	TraesCS2A01G165100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2B01G191300.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2D01G172200.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4A01G160900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4B01G160100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4D01G156000.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5A01G245400.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5B01G242900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5D01G252200.1	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G278500.1	Wheat	nucleus	98.76	87.42
TraesCS4A01G023500.1	Wheat	nucleus	98.34	85.49
HORVU4Hr1G074120.1	Barley	nucleus	95.45	82.38
TraesCS3B01G417400.1	Wheat	nucleus	85.93	74.79
Os11t0602200-01	Rice	nucleus	81.79	72.94
EER96081	Sorghum	nucleus	79.59	69.52
EES10399	Sorghum	nucleus	77.52	68.62
Zm00001d019195_P001	Maize	nucleus	79.59	67.41
CDY04931	Canola	cytosol, extracellular, nucleus	5.93	56.58
GSMUA_Achr5P27620_001	Banana	nucleus	45.66	53.56
Bra009408.1-P	Field mustard	nucleus	36.83	52.15
TraesCS1B01G319000.1	Wheat	nucleus	46.48	50.0
TraesCS1B01G378900.1	Wheat	nucleus	46.07	49.55
KRH56252	Soybean	nucleus	14.07	47.89
AT2G05900.1	Thale cress	cytoskeleton, cytosol, nucleus	19.45	45.19
CDX96449	Canola	nucleus	40.83	45.05
CDX68245	Canola	nucleus	41.24	44.89
Bra028776.1-P	Field mustard	nucleus	39.31	44.88
CDY11129	Canola	nucleus	41.38	44.84
CDY61331	Canola	nucleus	41.24	44.69
AT1G73100.1	Thale cress	nucleus	41.1	44.54
CDY11319	Canola	nucleus	39.59	44.5
Bra005829.1-P	Field mustard	nucleus	39.45	44.34
VIT_13s0047g00120.t01	Wine grape	nucleus	43.72	44.27
CDX80930	Canola	nucleus	39.17	44.1
TraesCS3B01G367200.1	Wheat	nucleus	45.1	44.01
TraesCS3B01G366900.1	Wheat	nucleus	45.1	44.01
Solyc09g082050.2.1	Tomato	nucleus	39.17	43.89
AT5G04940.2	Thale cress	nucleus	40.55	43.88
KRH20576	Soybean	nucleus	40.69	43.83
KRH13229	Soybean	nucleus	40.69	43.83
Bra016018.1-P	Field mustard	nucleus	40.83	43.72
CDY59935	Canola	nucleus	39.59	43.55
CDX98805	Canola	nucleus	39.03	43.21
PGSC0003DMT400077329	Potato	nucleus	39.72	42.92
TraesCS5B01G138800.1	Wheat	nucleus	41.93	42.82
Bra009409.1-P	Field mustard	nucleus	39.17	42.71
KRH62706	Soybean	nucleus	38.76	42.13
VIT_08s0040g00360.t01	Wine grape	nucleus	41.38	40.71
CDX98804	Canola	nucleus	34.07	40.29
KRH66648	Soybean	nucleus	38.76	39.69
PGSC0003DMT400018512	Potato	nucleus	39.17	39.55
Solyc10g077070.1.1	Tomato	nucleus	38.9	39.5
CDY14135	Canola	nucleus	39.31	39.47
CDY26218	Canola	nucleus	35.17	36.53
AT1G17770.1	Thale cress	nucleus	34.76	36.36
KRG95012	Soybean	plastid	24.14	35.86
CDY66122	Canola	nucleus	33.93	34.45
AT2G24740.1	Thale cress	nucleus	35.03	33.64
CDY56214	Canola	nucleus	35.72	32.66
TraesCS2B01G254700.1	Wheat	nucleus	26.76	28.83
Bra004258.1-P	Field mustard	nucleus	36.41	28.73
Bra025949.1-P	Field mustard	nucleus	35.03	28.44
CDY26221	Canola	nucleus	34.9	28.27
TraesCS1B01G055800.1	Wheat	nucleus	24.97	28.24
CDX70182	Canola	nucleus	39.17	28.06
TraesCS3B01G498000.1	Wheat	nucleus	23.86	26.91
TraesCS3B01G498100.1	Wheat	nucleus	22.76	26.23
TraesCS3B01G475200.1	Wheat	nucleus	23.59	26.03
TraesCS3B01G590300.1	Wheat	nucleus	22.48	25.96
TraesCS4B01G203900.1	Wheat	nucleus	24.0	25.7
TraesCS3B01G342100.1	Wheat	nucleus	10.9	23.8
TraesCS2B01G409600.1	Wheat	nucleus	23.59	17.78
TraesCS5B01G190000.1	Wheat	plastid	27.59	17.53
TraesCS2B01G503200.1	Wheat	nucleus	14.48	17.47
TraesCS6B01G255000.1	Wheat	nucleus	15.59	16.59
TraesCS2B01G399300.4	Wheat	nucleus	13.93	14.92
TraesCS1B01G137100.1	Wheat	nucleus, plastid	27.31	14.91
CDY01852	Canola	plasma membrane	37.24	14.55
TraesCS2B01G501300.2	Wheat	mitochondrion, nucleus	14.76	14.46
TraesCS2B01G616200.1	Wheat	nucleus	14.34	14.11
TraesCS5B01G185700.3	Wheat	nucleus	19.72	12.89
TraesCS6B01G302100.2	Wheat	nucleus	15.03	6.72
CDX89821	Canola	cytosol	0.14	1.23
CDX86631	Canola	cytosol	0.14	1.23
CDY21127	Canola	cytosol	0.14	1.23
CDY53193	Canola	mitochondrion	0.14	0.71

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	InterPro:AT_hook_DNA-bd_motif
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214
InterPro:IPR003105	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987	PFAM:PF00856	PFAM:PF02182
PFAM:PF05033	PRINTS:PR00929	PFscan:PS50280	PFscan:PS50867	PFscan:PS51015	PFscan:PS51575
PANTHER:PTHR22884	PANTHER:PTHR22884:SF479	InterPro:PUA-like_sf	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317
SMART:SM00384	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199
SUPFAM:SSF88697	EnsemblPlantsGene:TraesCS4B01G280000	EnsemblPlants:TraesCS4B01G280000.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4B:+:562880284..562882743

Molecular Weight (calculated)

80185.5 Da

IEP (calculated)

8.344

GRAVY (calculated)

-0.506

Length

725 amino acids

Sequence
(BLAST)

001: MAGNQQPASV VLDYAAVLDA KPLRTLTPMF PAPLGMHTFT PKSSSSVPPV QPVPTVPSVP PAPSAPPEVN NIVLQTPPAA VTQESGKRKR GRPKRVPDVS
101: VLPTPVPVAD GTPILQTPPA SSVHESVTKK RGRRPKLVQD SSDTSTPPVH SKESSVTPSA VTLLEGGKRK RGRPKRVPDS SVTPSSHSGL SVDVDSGDTS
201: KRGRPKKIDT SLLHLPSLFS DDPRESADNV LMMFDALRRR LMQLDEVKQV AKQQQNLKAG SIMMNAELRL NKNKRIGEVP GVEVGDMFYF RIEMCLVGLN
301: SQSMAGIDYM SAKFGNEEDP VAISIVSAGV YEDAEDDDPD VLVYSGHGMS GKDDQKLERG NLALERSLHR GNPIRVVRTV KDLTCSTGKI YIYDGLYQIR
401: EAWVEKGKSG FNMFKHKLLR EPGQPDGIAV WKKTEKWREN PSSRDRVILH DISYGVESKP ICLVNEVDDE KGPSHFTYTT KLNYMNSPSS MRKMQGCKCT
501: SVCLPGDNNC SCTHRNAGDL PYSASGILVS RMPMFYECND SCTCLHNCRN RVVQKGIQIH FEVFKTGDRG WGLRSWDPIR AGTFICEYAG VIVDKNALDA
601: EDDYIFETPP SEQNLRWNYA PELLGEPSLS DFNESSKQLP IIISAKHTGN IARFMNHSCS PNVFWQPVLY DHGDEGYPHI AFFAIKHIPP MTELTYDYGQ
701: SQGNSGCRRT KSCLCWSRKC RGSFG

Best Arabidopsis Sequence Match ( AT1G73100.1 )
(BLAST)

001: MQGVPGFNTV PNPNHYDKSI VLDIKPLRSL KPVFPNGNQG PPFVGCPPFG PSSSEYSSFF PFGAQQPTHD TPDLNQTQNT PIPSFVPPLR SYRTPTKTNG
101: PSSSSGTKRG VGRPKGTTSV KKKEKKTVAN EPNLDVQVVK KFSSDFDSGI SAAEREDGNA YLVSSVLMRF DAVRRRLSQV EFTKSATSKA AGTLMSNGVR
201: TNMKKRVGTV PGIEVGDIFF SRIEMCLVGL HMQTMAGIDY IISKAGSDEE SLATSIVSSG RYEGEAQDPE SLIYSGQGGN ADKNRQASDQ KLERGNLALE
301: NSLRKGNGVR VVRGEEDAAS KTGKIYIYDG LYSISESWVE KGKSGCNTFK YKLVRQPGQP PAFGFWKSVQ KWKEGLTTRP GLILPDLTSG AESKPVSLVN
401: DVDEDKGPAY FTYTSSLKYS ETFKLTQPVI GCSCSGSCSP GNHNCSCIRK NDGDLPYLNG VILVSRRPVI YECGPTCPCH ASCKNRVIQT GLKSRLEVFK
501: TRNRGWGLRS WDSLRAGSFI CEYAGEVKDN GNLRGNQEED AYVFDTSRVF NSFKWNYEPE LVDEDPSTEV PEEFNLPSPL LISAKKFGNV ARFMNHSCSP
601: NVFWQPVIRE GNGESVIHIA FFAMRHIPPM AELTYDYGIS PTSEARDESL LHGQRTCLCG SEQCRGSFG

Arabidopsis Description

SUVH3Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.