Factsheet for TraesCS4D01G156000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G160100.1	Wheat	cytosol	95.51	95.51
HORVU4Hr1G039650.1	Barley	nucleus	94.76	95.48
TraesCS4A01G160900.1	Wheat	cytosol	90.27	90.5
Zm00001d047214_P001	Maize	extracellular	67.58	68.26
Os03t0392400-01	Rice	nucleus	68.33	67.65
Zm00001d029409_P001	Maize	nucleus, peroxisome, plastid	65.34	66.16
EER92178	Sorghum	nucleus	65.34	65.01
TraesCS2D01G172200.1	Wheat	cytosol	48.13	49.36
GSMUA_Achr10P...	Banana	cytosol	41.4	39.43
GSMUA_Achr1P21390_001	Banana	cytosol	38.9	38.71
GSMUA_Achr3P06790_001	Banana	cytosol	29.18	36.0
TraesCS1D01G139900.1	Wheat	plastid	17.71	34.63
AT5G09540.1	Thale cress	nucleus	21.7	31.07
CDY69792	Canola	cytosol	22.44	30.72
Bra009389.1-P	Field mustard	cytosol	22.44	30.72
CDY21586	Canola	cytosol	21.2	29.41
CDY31322	Canola	cytosol	26.18	28.15
Bra031921.1-P	Field mustard	cytosol	25.69	27.91
Solyc07g007230.2.1	Tomato	nucleus	26.43	24.88
VIT_03s0017g00300.t01	Wine grape	nucleus	29.93	24.69
AT5G64360.7	Thale cress	nucleus	28.43	24.57
KRH49811	Soybean	nucleus	28.43	24.2
KRH42098	Soybean	nucleus	27.43	24.18
Bra024289.1-P	Field mustard	nucleus	26.93	23.53
CDX84519	Canola	nucleus	26.68	22.53
KRH21766	Soybean	nucleus	27.43	22.04
CDY58269	Canola	nucleus	27.43	21.91
KRH10601	Soybean	nucleus	26.68	21.53
TraesCS5D01G252200.1	Wheat	cytosol, nucleus, plastid	28.18	21.44
PGSC0003DMT400079004	Potato	cytosol	26.68	20.94
CDY46799	Canola	nucleus	18.7	19.13
Solyc11g006170.1.1	Tomato	nucleus	27.68	17.1
PGSC0003DMT400073845	Potato	cytosol	26.93	16.56
Solyc01g105780.2.1	Tomato	nucleus	29.18	16.32
Solyc11g006140.1.1	Tomato	nucleus	24.19	16.3
PGSC0003DMT400083794	Potato	nucleus	29.43	15.88
CDY45966	Canola	nucleus	23.19	12.5
Bra027007.1-P	Field mustard	nucleus	22.94	12.33
CDY45473	Canola	nucleus	22.94	12.3
AT1G62970.1	Thale cress	nucleus	22.69	11.42

Protein Annotations

EnsemblPlants:TraesCS4D01G156000.1	EnsemblPlantsGene:TraesCS4D01G156000	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR45496	PFAM:PF00226	PFscan:PS50076	SEG:seg	SMART:SM00271
SUPFAM:SSF46565	TIGR:cd06257	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr4D:+:209209026..209210624

Molecular Weight (calculated)

42444.8 Da

IEP (calculated)

6.318

GRAVY (calculated)

-0.385

Length

401 amino acids

Sequence
(BLAST)

001: MNFSVGAGGS GDGGGEGGRV QAERWLEIAA KLLAARDLVG CKRFAERAVE ADPLLPGADE LLAVADVLLT SQAMLYTGEP DPYAVLQVPS KTTDHGAISR
101: AFRRLALLLQ SSNPHPGADV ALRIVNDAYE LLSDPSRQPL RSARTNIPSG APSHPAAAAA PAAEATDFWT ACPFCCYVHQ YPRELVGRAL KCPNESCRRG
201: FVAVEIPTQP TIVPGTEMYH CAWGFFPLGF PNSADLGGNW KPFYKVFPWN NAPSGGGAIG RNYSNHGGGS NGRQPQNESA RGGSSRGRVK KTTARKKVGA
301: GPKRRSFGGG VESGIDASML GQDGWAEGEE GEGGQREEVR GININEEAQA TDGTGRANVT GGVEDLGSFH LDVDPTEDIL GNLGNLHNLP FLRVDNLGRM
401: L

Best Arabidopsis Sequence Match ( AT2G01710.2 )
(BLAST)

001: MLLFFFPRPF LHTANQSLVS SSLVEAIIFR SAHHFSAIAD GRRKMGDNNP NRSEAERLLG IAEKLLESRD LNGSKEFAIL AQETEPLLEG TDQILAVVDV
101: LLSSAPENRI KNQPNWYKIL QIEDLTESST DNDLIKKQYR RLALLLHPDK NRFPFADQAF RFVLDAWEVL STPTKKSQFD GDLNLIFTKV NLNTQKSKKK
201: TTTNEKMSTF WTACPYCYSL HEYPRVYQEY CIRCQNCQRA FHAASIPQLP PLIPGKDEYY CCWGFFPMGF VGGKGGEAAI ANGVDAAKFP NWMPPVFSSG
301: GVAAPPSGNG VSFDGWSGGA AKRDNEAVRS NNGVGVNSDG TPKKRGRGRP KKNPV

Arabidopsis Description

Chaperone DnaJ-domain superfamily protein [Source:TAIR;Acc:AT2G01710]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.