Factsheet for TraesCS4D01G278500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G165100.1
TraesCS2B01G191300.1
TraesCS2D01G172200.1
TraesCS4A01G160900.1
TraesCS4B01G160100.1
TraesCS4D01G156000.1
TraesCS5A01G245400.1
TraesCS5B01G242900.1
TraesCS5D01G252200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G73100.1	TraesCS2A01G165100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2B01G191300.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS2D01G172200.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4A01G160900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4B01G160100.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS4D01G156000.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5A01G245400.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5B01G242900.1	AT5G09540.1	21798944
AT1G73100.1	TraesCS5D01G252200.1	AT5G09540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G280000.1	Wheat	nucleus	87.42	98.76
TraesCS4A01G023500.1	Wheat	nucleus	97.8	96.04
HORVU4Hr1G074120.1	Barley	nucleus	95.24	92.86
TraesCS3D01G378200.1	Wheat	plastid	73.02	87.3
Os11t0602200-01	Rice	nucleus	79.49	80.07
EER96081	Sorghum	nucleus	78.02	76.99
EES10399	Sorghum	nucleus	75.21	75.21
Zm00001d019195_P001	Maize	nucleus	77.9	74.53
CDY04931	Canola	cytosol, extracellular, nucleus	5.25	56.58
GSMUA_Achr5P27620_001	Banana	nucleus	41.88	55.5
Bra009408.1-P	Field mustard	nucleus	32.6	52.15
TraesCS1D01G307700.1	Wheat	nucleus	42.73	51.93
TraesCS1D01G366800.1	Wheat	nucleus	42.61	51.63
KRH56252	Soybean	nucleus	12.45	47.89
CDY11319	Canola	nucleus	37.12	47.13
CDX96449	Canola	nucleus	37.73	47.03
Bra005829.1-P	Field mustard	nucleus	37.0	46.98
CDX68245	Canola	nucleus	38.1	46.85
CDY11129	Canola	nucleus	38.22	46.79
Bra028776.1-P	Field mustard	nucleus	36.26	46.77
CDY61331	Canola	nucleus	38.1	46.64
CDX80930	Canola	nucleus	36.51	46.43
VIT_13s0047g00120.t01	Wine grape	nucleus	40.54	46.37
Solyc09g082050.2.1	Tomato	nucleus	36.51	46.21
TraesCS3D01G329100.1	Wheat	nucleus	41.88	46.16
AT5G04940.2	Thale cress	nucleus	37.73	46.12
AT1G73100.1	Thale cress	nucleus	37.61	46.04
Bra016018.1-P	Field mustard	nucleus	37.73	45.64
CDY59935	Canola	nucleus	36.63	45.52
CDX98805	Canola	nucleus	36.26	45.34
TraesCS5D01G152000.1	Wheat	nucleus	37.97	45.2
AT2G05900.1	Thale cress	cytoskeleton, cytosol, nucleus	17.22	45.19
PGSC0003DMT400077329	Potato	nucleus	37.0	45.16
Bra009409.1-P	Field mustard	nucleus	36.63	45.11
KRH13229	Soybean	nucleus	36.26	44.13
KRH20576	Soybean	nucleus	36.26	44.13
CDX98804	Canola	nucleus	32.23	43.07
KRH62706	Soybean	nucleus	35.04	43.03
VIT_08s0040g00360.t01	Wine grape	nucleus	37.97	42.2
KRH66648	Soybean	nucleus	36.14	41.81
CDY14135	Canola	nucleus	36.26	41.14
PGSC0003DMT400018512	Potato	nucleus	36.02	41.09
Solyc10g077070.1.1	Tomato	nucleus	35.78	41.04
KRG95012	Soybean	plastid	23.2	38.93
CDY26218	Canola	nucleus	32.36	37.97
AT1G17770.1	Thale cress	nucleus	31.75	37.52
CDY66122	Canola	nucleus	31.62	36.27
AT2G24740.1	Thale cress	nucleus	32.11	34.83
CDY56214	Canola	nucleus	33.09	34.17
TraesCS2D01G240000.1	Wheat	nucleus	24.91	30.22
Bra025949.1-P	Field mustard	nucleus	32.72	30.01
Bra004258.1-P	Field mustard	nucleus	33.58	29.92
CDY26221	Canola	nucleus	32.6	29.83
CDX70182	Canola	nucleus	36.63	29.64
TraesCS1D01G043400.1	Wheat	nucleus	23.08	29.53
TraesCS3D01G433900.1	Wheat	nucleus	23.32	27.68
TraesCS3D01G450600.1	Wheat	nucleus	21.61	26.07
TraesCS4D01G204500.1	Wheat	nucleus	21.49	25.92
TraesCS3D01G450700.1	Wheat	nucleus	21.37	25.04
TraesCS3D01G307900.1	Wheat	nucleus	9.89	24.4
TraesCS1D01G241500.1	Wheat	nucleus	23.57	23.57
TraesCS2D01G389100.1	Wheat	nucleus	21.61	18.44
TraesCS5D01G197700.2	Wheat	plastid	25.4	18.34
TraesCS2D01G478100.1	Wheat	nucleus	12.94	17.73
TraesCS1D01G118300.1	Wheat	nucleus, plastid	25.4	16.99
TraesCS6D01G208400.1	Wheat	nucleus	13.68	16.45
CDY01852	Canola	plasma membrane	34.55	15.25
TraesCS2D01G477200.1	Wheat	mitochondrion, nucleus	13.55	15.04
TraesCS2D01G378500.3	Wheat	nucleus	12.33	14.9
TraesCS2D01G566400.1	Wheat	nucleus	12.7	14.11
TraesCS5D01G193000.2	Wheat	nucleus	17.58	12.82
TraesCS6D01G254900.2	Wheat	nucleus	13.43	6.81
TraesCS5D01G192900.1	Wheat	cytosol	0.73	3.68
CDX89821	Canola	cytosol	0.12	1.23
CDY21127	Canola	cytosol	0.12	1.23
CDX86631	Canola	cytosol	0.12	1.23
CDY53193	Canola	mitochondrion	0.12	0.71

Protein Annotations

KEGG:00310+2.1.1.43	MapMan:12.3.3.7	MapMan:12.5.1.16.1	Gene3D:2.170.270.10	Gene3D:2.30.280.10	InterPro:AT_hook_DNA-bd_motif
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009987	GO:GO:0016043	GO:GO:0016571
GO:GO:0016740	GO:GO:0018024	GO:GO:0019538	GO:GO:0034968	InterPro:Hist-Lys_N-MeTrfase_plant	InterPro:IPR001214
InterPro:IPR003105	InterPro:IPR007728	InterPro:IPR025794	InterPro:IPR036987	PFAM:PF00856	PFAM:PF02182
PFAM:PF05033	PRINTS:PR00929	PFscan:PS50280	PFscan:PS50867	PFscan:PS51015	PFscan:PS51575
PANTHER:PTHR22884	PANTHER:PTHR22884:SF479	InterPro:PUA-like_sf	InterPro:Pre-SET_dom	InterPro:SET_dom	SMART:SM00317
SMART:SM00384	SMART:SM00466	SMART:SM00468	InterPro:SRA-YDG_sf	InterPro:SRA_YDG	SUPFAM:SSF82199
SUPFAM:SSF88697	EnsemblPlantsGene:TraesCS4D01G278500	EnsemblPlants:TraesCS4D01G278500.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr4D:+:450137795..450140254

Molecular Weight (calculated)

89896.2 Da

IEP (calculated)

8.535

GRAVY (calculated)

-0.491

Length

819 amino acids

Sequence
(BLAST)

001: MAGNQHPASV VLDYAAVLDA KPLRTLTPMF PAPLGMHTFT PKSSSSVVCV TPFGPYAGGT ELGMAGGVPP MLTSLSAPAD PNQVQPYTAH MNGPSNANGT
101: TNNTMVTPVL QTPPAVTTQE SGKKKRGRPR RVQDTTTVPS VPPVQPVPTV PTVHLVPSAP PEVNNIVLQT PPSAVTQESG KRKRGRPKRV PDVSVLPTPV
201: PVADGTPILQ TPPASSVHES VTKKRGRRPK LVQDSSDTST PPVHSKESSV TPSAVTLLEG GKRKRGRPKR VPDSSVTPSS HSGLSVDVDS GDTSKRGRPK
301: KIDTSLLHLP SLFSDDPRES ADNVLMMFDA LRRRLVQLDE VKQVAKQQQN LKAGSIMMNA ELRLNKNKRI GEVPGVEVGD MFYFRIEMCL VGLNSQSMAG
401: IDYMSAKFGN EEDPVAISIV SAGVYEDAED DDPDVLVYSG HGMSGKDDQK LERGNLALER SLHRGNPIRV VRTVKDLTCS TGKIYIYDGL YQIREAWVEK
501: GKSGFNMFKH KLLREPGQPD GIAVWKKTEK WRENPSSRDR VILHDISYGV ESKPICLVNE VDDEKGPSHF TYTTKLNYMN SPSSMRKMQG CKCTSVCLPG
601: DNNCSCTHRN AGDLPYSASG ILVSRMPMLY ECNDSCTCLH NCRNRVVQKG IQIHFEVFKT GDRGWGLRSW DPIRAGTFIC EYAGVIVDKN ALDAEDDYIF
701: ETPPSEQNLR WNYAPELLGE PSLSDLNESS KQLPIIISAK HTGNIARFMN HSCSPNVFWQ PVLYDHGDEG YPHIAFFAIK HIPPMTELTY DYGQSQGNSG
801: CRRTKSCLCW SRKCRGSFG

Best Arabidopsis Sequence Match ( AT1G73100.1 )
(BLAST)

001: MQGVPGFNTV PNPNHYDKSI VLDIKPLRSL KPVFPNGNQG PPFVGCPPFG PSSSEYSSFF PFGAQQPTHD TPDLNQTQNT PIPSFVPPLR SYRTPTKTNG
101: PSSSSGTKRG VGRPKGTTSV KKKEKKTVAN EPNLDVQVVK KFSSDFDSGI SAAEREDGNA YLVSSVLMRF DAVRRRLSQV EFTKSATSKA AGTLMSNGVR
201: TNMKKRVGTV PGIEVGDIFF SRIEMCLVGL HMQTMAGIDY IISKAGSDEE SLATSIVSSG RYEGEAQDPE SLIYSGQGGN ADKNRQASDQ KLERGNLALE
301: NSLRKGNGVR VVRGEEDAAS KTGKIYIYDG LYSISESWVE KGKSGCNTFK YKLVRQPGQP PAFGFWKSVQ KWKEGLTTRP GLILPDLTSG AESKPVSLVN
401: DVDEDKGPAY FTYTSSLKYS ETFKLTQPVI GCSCSGSCSP GNHNCSCIRK NDGDLPYLNG VILVSRRPVI YECGPTCPCH ASCKNRVIQT GLKSRLEVFK
501: TRNRGWGLRS WDSLRAGSFI CEYAGEVKDN GNLRGNQEED AYVFDTSRVF NSFKWNYEPE LVDEDPSTEV PEEFNLPSPL LISAKKFGNV ARFMNHSCSP
601: NVFWQPVIRE GNGESVIHIA FFAMRHIPPM AELTYDYGIS PTSEARDESL LHGQRTCLCG SEQCRGSFG

Arabidopsis Description

SUVH3Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C5P4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.