Factsheet for TraesCS6A01G096500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G087600.1	Wheat	cytosol, plastid	97.22	97.22
TraesCS6B01G124900.1	Wheat	cytosol, plastid	95.48	94.49
HORVU6Hr1G017720.35	Barley	plastid	88.17	85.59
Os02t0132600-02	Rice	cytosol	41.65	66.48
GSMUA_Achr1P26200_001	Banana	extracellular	23.9	58.03
OQU84311	Sorghum	mitochondrion	63.23	55.67
Zm00001d015156_P001	Maize	plastid	61.6	55.43
KRG88500	Soybean	cytosol	5.45	50.54
VIT_19s0014g05230.t01	Wine grape	cytosol	30.86	45.32
PGSC0003DMT400049471	Potato	cytosol	21.58	43.16
KRH25868	Soybean	cytosol, nucleus, plastid	13.69	42.45
KRH25865	Soybean	cytosol	7.19	42.18
KRH55647	Soybean	cytosol	22.62	42.03
KRH22239	Soybean	cytosol	20.3	37.23
Solyc07g064110.2.1	Tomato	plastid	35.38	35.88
Bra013567.1-P	Field mustard	cytosol, mitochondrion	32.13	35.56
CDX79101	Canola	cytosol, mitochondrion	33.99	35.43
Bra029518.1-P	Field mustard	plastid	30.74	34.87
AT4G04790.1	Thale cress	cytosol, mitochondrion	32.95	34.59
GSMUA_Achr1P26220_001	Banana	plastid	16.82	34.04
CDX82873	Canola	cytosol, mitochondrion	33.53	33.72
CDY16646	Canola	plastid	32.02	33.7
KRH27097	Soybean	cytosol, mitochondrion	29.47	33.64
AT4G21880.1	Thale cress	cytosol	32.71	33.45
CDX94576	Canola	plastid	31.9	33.33
KRH55650	Soybean	mitochondrion, plastid	12.88	28.68
KRG88502	Soybean	vacuole	12.53	28.65

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF623	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS6A01G096500	EnsemblPlants:TraesCS6A01G096500.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:-:63768712..63776216

Molecular Weight (calculated)

97520.0 Da

IEP (calculated)

5.354

GRAVY (calculated)

-0.325

Length

862 amino acids

Sequence
(BLAST)

001: MWKRLLETTK KVAAAAPELA TRKRPSTSRG PAVSLATAVS RASLLRLKQA AASKKTTLPS SLPHALANDG EEEDNSRDFT KEILSILNGP DDAEESGATE
101: ALPEESEDDV DAIGNKILDM EWFAGSQPSN AMMHLQKEVA REKKKRYIFR NTESRRFTRL MRMCADKLGT ESALEFFGRL GRDTGPKEFN ALIRVCLEKA
201: RACGDIDSAV EHIFRAYRLF EMMKYRGFQI EEDSYGPFLL YLVDVELLEE FEMFSAFFRD ANPRSCSRIP YYEMLLLIRA QDEESIRELC RSVEDCSEEA
301: DYCIAESYML AFAESNRKMD FVTFLELLDP TKVLGSKYIS SIFKYMGRLK LENHAEKFLQ KMTSKEYSDV KVSSLIFDYA ANIPSIEAED VISLFNKWQE
401: KFKVAPSVGV YDRIISFCCS SSKISLALDV AECLCKSNPS VPIELLNPII NVCEQGYELH MARPLYNLMS LYKLKLKPET FRSMISLCVK MKDFEGAYTI
501: LTDAEESGET STVSLYNVIM AGYFREKNHN GAQMVMSQMQ IAGVKPDSET FSYLISNCDC EEKISKYLDE LRRDGVQMTK HAYMALINAY SRLGNFDMAK
601: QVAQDKEIPP KCLSEVRSAL VGALASNGKV SDGLELFDEI KQSGGYLEPK AAIALIEHTQ TEDQLDRLYQ LLEEVSDPGM WFDGCGRVLQ YCVQHNHPDA
701: AVDLLKQLKE TNEMSTYMIV DQVFCQIWEM EPVNLDVGME LLRAVKELGL NVSRTSLDFL LSACVKAKDS QRAQQIWEEY ESSGLPHNVL TSLRMYQALL
801: SSAQRSTTKK SAEWSAAKKL YKTIPKEDPH VCCILDSCKI TYNRKCGKRK AATKPSPGKQ EV

Best Arabidopsis Sequence Match ( AT4G04790.3 )
(BLAST)

001: MVVSKVNKSL LSSVFKSRIR PTGESSIASG NKDIAGTSQA VKDLLSSKNS SSDLEEASLQ DRVSKLLHDK SSLEKNLFLK IPSFTTKIPY DISLRTKELS
101: RERKERRVYK QNGLSRRFAK IFRDSAQKLG TEAMFGAFDR VAKEMSVTEY NAMIGVYLEH AEKSNDLDYA LGHIEKAFEL LKSMRDRGFL IEERVYGPLL
201: GYLIGMDMVD EFHSFKDVIR EASPGSVERL GYYEMLLWIH LGDGEKIEEL CSTIDGDNGE SLSVLQENYL LALCKKDQKY HLERLLEIVD ITKVRSSDLL
301: ANIFEYLGRF SLDSVASRFL WELRESDEGV KNVSDLISIY STCTPNPTVE DTILKFNKMH EELDVMPSST SYEKLVKYSC DSNEVVTALD VVEKMGEAGL
401: MISADILHSL LHAIDEVLEF DLVRRIHSIM CTKSVKPNTE NFRSIIRLCT RIKDFEGAYN MLGNLKNFNL EPNSSMFNCI LAGYFREKNV SSALMVVKQM
501: KEAGVKPDSI TFGYLINNCT QEDAITKYYE EMKQAGVQAT KRIYMSLIDA YAASGKFEKA KQVLVDPDVP AINQNELKSV LISALASRGK WADALHIYEE
601: MRKAECHVDP KSIISLIEYS DSKGELSTLV QLADDLQDDT SWIDGFFRMI LFAVRNKKSS DIVDLLKRNK VRLLKKGIPV EAHFDEVFWA IAETEPSKVH
701: LGMDLLRFMK DELGFVPSRK CLDFLLHACV NAKDLEHGLL VWKEYQSAAF PCNVLSFLRM YQVLLAAGDS EGAKALVSKI PKDDKDVQHI IEESQSAFSQ
801: APNKKKPKKK MIVLSTK

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g04790, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ81]
SUBAcon: [cytosol,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.