Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G361300.1 | Wheat | nucleus | 33.8 | 63.91 |
| HORVU6Hr1G080290.6 | Barley | nucleus | 32.41 | 61.74 |
| TraesCS6D01G309500.4 | Wheat | nucleus | 32.6 | 61.65 |
| GSMUA_Achr2P23110_001 | Banana | nucleus | 8.15 | 28.67 |
| TraesCS1A01G314400.2 | Wheat | nucleus | 34.0 | 21.7 |
| Bra033600.1-P | Field mustard | endoplasmic reticulum | 11.73 | 18.91 |
| KXG24287 | Sorghum | nucleus | 28.03 | 18.08 |
| Zm00001d017507_P001 | Maize | nucleus | 18.69 | 17.7 |
| OQU75762 | Sorghum | nucleus | 26.44 | 16.48 |
| CDX72715 | Canola | nucleus | 16.5 | 15.99 |
| Zm00001d035113_P001 | Maize | nucleus | 26.24 | 15.75 |
| CDY56766 | Canola | nucleus | 16.7 | 15.67 |
| CDY12124 | Canola | nucleus | 17.5 | 14.94 |
| AT4G39160.2 | Thale cress | nucleus | 18.49 | 14.9 |
| CDX87111 | Canola | nucleus | 15.51 | 14.44 |
| Bra010701.1-P | Field mustard | nucleus | 16.5 | 14.07 |
| CDX90315 | Canola | nucleus | 16.5 | 14.02 |
| CDY16866 | Canola | vacuole | 14.12 | 13.05 |
| Zm00001d017505_P003 | Maize | plastid | 27.24 | 12.06 |
| KRG92007 | Soybean | nucleus | 11.73 | 11.37 |
| KRH34776 | Soybean | nucleus | 10.34 | 10.44 |
| Solyc02g081640.2.1 | Tomato | nucleus | 14.31 | 10.21 |
| PGSC0003DMT400045728 | Potato | nucleus | 14.31 | 10.08 |
| VIT_03s0038g04460.t01 | Wine grape | nucleus | 16.7 | 7.98 |
| KRH77688 | Soybean | nucleus | 14.71 | 7.91 |
| KRH27726 | Soybean | nucleus | 14.91 | 7.91 |
| Os03t0840500-00 | Rice | cytosol, nucleus | 5.57 | 6.56 |
Protein Annotations
| Gene3D:1.20.58.1880 | MapMan:15.4.3.2 | MapMan:15.5.2.2 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017884 | PFAM:PF15963 | PFscan:PS51293 |
| InterPro:SANT/Myb | InterPro:SANT_dom | SMART:SM00717 | SUPFAM:SSF46689 | EnsemblPlantsGene:TraesCS6A01G330400 | EnsemblPlants:TraesCS6A01G330400.1 |
| TIGR:cd00167 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:562939654..562942908
Molecular Weight (calculated)
58757.0 Da
IEP (calculated)
5.869
GRAVY (calculated)
-1.134
Length
503 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFLVWVSLA NFSNHSRMFR RISNRSELPE KKQQKNKSEV SSPGRKRAMK DKLTERTDKK LTHRIRQKRT KVSEVKTLLE KPDHEIAHMK LSVMHLRLLQ
101: EARERIKSKT ILSGPSSSNQ SNSQFGDTNS FDPFEENYEE NYDNDRRENH VLENATKLNY HSYMNKQTRA KWSKSDTDLF YQGLQQFGSD FAMIQQLFPD
201: KSRDQVRQKF KTEEKKHPMQ VHDAILHRSR DTLYLKQVIK QLNIEDLQRG MSSTHKQEVA SIEGDTGNED FIEEVENGSN WSDKELGTRQ SEVREGEHVS
301: GNADDDLDLD VFDCSQFGGT DTFDPFGENY DNDRIENHVL ENATKLNYYS YMNKQTRAKW SKSDTDLFYQ GLQQFGSNFA MIQQLFPDKS RDQVRQKFKT
401: EEKKHPMQVH DAILHRSRDT LYLKQVIKQL NIEDLQRGMN SAQKQEVGSI EGDTGNEDFI EEEENGSNWS DKELGTRQSE AREGEHVSGN ADDDLDLDVF
501: DWY
101: EARERIKSKT ILSGPSSSNQ SNSQFGDTNS FDPFEENYEE NYDNDRRENH VLENATKLNY HSYMNKQTRA KWSKSDTDLF YQGLQQFGSD FAMIQQLFPD
201: KSRDQVRQKF KTEEKKHPMQ VHDAILHRSR DTLYLKQVIK QLNIEDLQRG MSSTHKQEVA SIEGDTGNED FIEEVENGSN WSDKELGTRQ SEVREGEHVS
301: GNADDDLDLD VFDCSQFGGT DTFDPFGENY DNDRIENHVL ENATKLNYYS YMNKQTRAKW SKSDTDLFYQ GLQQFGSNFA MIQQLFPDKS RDQVRQKFKT
401: EEKKHPMQVH DAILHRSRDT LYLKQVIKQL NIEDLQRGMN SAQKQEVGSI EGDTGNEDFI EEEENGSNWS DKELGTRQSE AREGEHVSGN ADDDLDLDVF
501: DWY
001: MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKKQVSLST TQTTLSPDVA QEKLSTQSED LVPLDGSSEI PSNALPSETN VPDSGSINKS TIGTLSEENE
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M
101: DAFPRGVHWS VKPSILRACN NVNLVGNRRD DGIEATTSFP DDPRTQDSAI FGDYVTPETG ADEGRVDMET LDIVQEEGTT SSYVQHTGKL QPKPRLLETV
201: VEEPEPHYSA GDTGYFPMGT NESEFMANVE SRNGFSTYED LQEEELNIPE APRETVGEME AQNASGGWEQ EEQGVSPCIN NTVTGEEENC MGNTVEEQSK
301: RESKTGKSKR ATSRKRKKTS EEPNKSSEKT EQKKFKHSSR RQKRTLEKEL LETPDHEIRS LPLRDMLRLV EYKEWMQKKE AKGAGVQPSQ ESNNMNGSGS
401: QYHSQGFDEE DEFGDFGIES SEYQENNVVK PDSPVNYQTY MNKTSRTRWS KEDTELFYEG IQEFGSNLSM IQQLFPERTR EQMKLKFKLE ERRNPLKLND
501: ALSSRSKHFT HFKNVIKKLQ QEAAAAKEGE EEEEAGAEAE TTDVPENEEP EKSEETERAS DGVAAGVKES DGGDVENGVR SDGGDECDDD EDFWNSYKSD
601: M
Arabidopsis Description
Homeodomain-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JVA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.